Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC005332.3-201ENST00000589904 676 ntBASIC17.96■□□□□ 0.47
MSH3P20585 GPR32P1-201ENST00000601788 811 ntBASIC17.96■□□□□ 0.47
MSH3P20585 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH3P20585 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
MSH3P20585 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.96■□□□□ 0.47
MSH3P20585 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH3P20585 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH3P20585 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH3P20585 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH3P20585 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
MSH3P20585 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
MSH3P20585 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
MSH3P20585 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
MSH3P20585 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
MSH3P20585 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
MSH3P20585 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSH3P20585 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
MSH3P20585 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSH3P20585 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSH3P20585 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSH3P20585 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSH3P20585 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
MSH3P20585 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
MSH3P20585 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
MSH3P20585 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.95■□□□□ 0.46
MSH3P20585 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
MSH3P20585 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.95■□□□□ 0.46
MSH3P20585 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.95■□□□□ 0.46
MSH3P20585 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.95■□□□□ 0.46
MSH3P20585 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.95■□□□□ 0.46
MSH3P20585 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.95■□□□□ 0.46
MSH3P20585 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
MSH3P20585 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
MSH3P20585 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.95■□□□□ 0.46
MSH3P20585 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSH3P20585 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
MSH3P20585 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
MSH3P20585 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSH3P20585 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
MSH3P20585 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.95■□□□□ 0.46
MSH3P20585 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.95■□□□□ 0.46
MSH3P20585 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
MSH3P20585 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
MSH3P20585 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
MSH3P20585 Z83836.1-201ENST00000624605 1642 ntBASIC17.94■□□□□ 0.46
MSH3P20585 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH3P20585 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
MSH3P20585 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.94■□□□□ 0.46
MSH3P20585 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
MSH3P20585 IER3-202ENST00000376377 1350 ntBASIC17.94■□□□□ 0.46
MSH3P20585 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
MSH3P20585 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH3P20585 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
MSH3P20585 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH3P20585 AL096828.2-201ENST00000567259 1965 ntBASIC17.94■□□□□ 0.46
MSH3P20585 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH3P20585 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.94■□□□□ 0.46
MSH3P20585 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.94■□□□□ 0.46
MSH3P20585 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH3P20585 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
MSH3P20585 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.94■□□□□ 0.46
MSH3P20585 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH3P20585 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.94■□□□□ 0.46
MSH3P20585 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.94■□□□□ 0.46
MSH3P20585 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.94■□□□□ 0.46
MSH3P20585 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.94■□□□□ 0.46
MSH3P20585 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.94■□□□□ 0.46
MSH3P20585 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH3P20585 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
MSH3P20585 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH3P20585 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
MSH3P20585 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.94■□□□□ 0.46
MSH3P20585 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.94■□□□□ 0.46
MSH3P20585 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH3P20585 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH3P20585 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH3P20585 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
MSH3P20585 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
MSH3P20585 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
MSH3P20585 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.93■□□□□ 0.46
MSH3P20585 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.93■□□□□ 0.46
MSH3P20585 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.93■□□□□ 0.46
MSH3P20585 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.93■□□□□ 0.46
MSH3P20585 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
MSH3P20585 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.93■□□□□ 0.46
MSH3P20585 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.93■□□□□ 0.46
MSH3P20585 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
MSH3P20585 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms