Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC106886.1-201ENST00000568660 600 ntBASIC18.65■□□□□ 0.58
COL6A3P12111 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC18.65■□□□□ 0.58
COL6A3P12111 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC18.65■□□□□ 0.58
COL6A3P12111 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.65■□□□□ 0.58
COL6A3P12111 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.65■□□□□ 0.58
COL6A3P12111 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A3P12111 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.65■□□□□ 0.58
COL6A3P12111 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC18.65■□□□□ 0.58
COL6A3P12111 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A3P12111 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A3P12111 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A3P12111 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A3P12111 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A3P12111 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.65■□□□□ 0.58
COL6A3P12111 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC18.65■□□□□ 0.58
COL6A3P12111 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A3P12111 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A3P12111 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A3P12111 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.65■□□□□ 0.58
COL6A3P12111 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.65■□□□□ 0.58
COL6A3P12111 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A3P12111 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.65■□□□□ 0.58
COL6A3P12111 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A3P12111 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A3P12111 AC119751.2-201ENST00000504529 210 ntBASIC18.65■□□□□ 0.58
COL6A3P12111 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A3P12111 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.64■□□□□ 0.58
COL6A3P12111 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL6A3P12111 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL6A3P12111 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL6A3P12111 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
COL6A3P12111 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.64■□□□□ 0.57
COL6A3P12111 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A3P12111 AL512384.1-201ENST00000406683 331 ntBASIC18.64■□□□□ 0.57
COL6A3P12111 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.64■□□□□ 0.57
COL6A3P12111 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC18.64■□□□□ 0.57
COL6A3P12111 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A3P12111 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
COL6A3P12111 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A3P12111 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A3P12111 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A3P12111 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A3P12111 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A3P12111 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A3P12111 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A3P12111 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
COL6A3P12111 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
COL6A3P12111 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A3P12111 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A3P12111 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A3P12111 AC138969.3-201ENST00000546612 1459 ntBASIC18.63■□□□□ 0.57
COL6A3P12111 AC138932.2-201ENST00000548268 1459 ntBASIC18.63■□□□□ 0.57
COL6A3P12111 AC126755.4-201ENST00000549796 1459 ntBASIC18.63■□□□□ 0.57
COL6A3P12111 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A3P12111 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A3P12111 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A3P12111 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.63■□□□□ 0.57
COL6A3P12111 PPP6R2P1-201ENST00000450880 1275 ntBASIC18.63■□□□□ 0.57
COL6A3P12111 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A3P12111 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC18.63■□□□□ 0.57
COL6A3P12111 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.63■□□□□ 0.57
COL6A3P12111 KRT8P48-201ENST00000515599 1220 ntBASIC18.63■□□□□ 0.57
COL6A3P12111 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A3P12111 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.63■□□□□ 0.57
COL6A3P12111 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC18.63■□□□□ 0.57
COL6A3P12111 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.63■□□□□ 0.57
COL6A3P12111 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A3P12111 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
COL6A3P12111 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A3P12111 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.63■□□□□ 0.57
COL6A3P12111 Z82202.1-201ENST00000623446 1880 ntBASIC18.63■□□□□ 0.57
COL6A3P12111 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
COL6A3P12111 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
COL6A3P12111 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A3P12111 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A3P12111 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A3P12111 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.63■□□□□ 0.57
COL6A3P12111 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.63■□□□□ 0.57
COL6A3P12111 AC132938.2-201ENST00000579188 680 ntBASIC18.63■□□□□ 0.57
COL6A3P12111 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.63■□□□□ 0.57
COL6A3P12111 AL591163.1-201ENST00000641757 987 ntBASIC18.63■□□□□ 0.57
COL6A3P12111 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A3P12111 NCF1C-201ENST00000438382 1427 ntBASIC18.62■□□□□ 0.57
COL6A3P12111 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A3P12111 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A3P12111 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A3P12111 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.62■□□□□ 0.57
COL6A3P12111 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A3P12111 RPF1-202ENST00000370656 724 ntTSL 2 BASIC18.62■□□□□ 0.57
COL6A3P12111 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.62■□□□□ 0.57
COL6A3P12111 TMPRSS11CP-201ENST00000453277 683 ntBASIC18.62■□□□□ 0.57
COL6A3P12111 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A3P12111 RN7SL190P-201ENST00000582519 257 ntBASIC18.62■□□□□ 0.57
COL6A3P12111 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.62■□□□□ 0.57
COL6A3P12111 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A3P12111 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC18.62■□□□□ 0.57
COL6A3P12111 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC18.62■□□□□ 0.57
COL6A3P12111 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.62■□□□□ 0.57
COL6A3P12111 ARL16-210ENST00000574938 751 ntTSL 2 BASIC18.62■□□□□ 0.57
COL6A3P12111 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms