Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
VIMP08670 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VIMP08670 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VIMP08670 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
VIMP08670 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VIMP08670 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VIMP08670 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
VIMP08670 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VIMP08670 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.14■□□□□ 0.49
VIMP08670 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
VIMP08670 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VIMP08670 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.14■□□□□ 0.49
VIMP08670 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.14■□□□□ 0.49
VIMP08670 AC105036.2-201ENST00000569468 176 ntBASIC18.14■□□□□ 0.49
VIMP08670 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.14■□□□□ 0.49
VIMP08670 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
VIMP08670 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.14■□□□□ 0.49
VIMP08670 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.14■□□□□ 0.49
VIMP08670 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.14■□□□□ 0.49
VIMP08670 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.14■□□□□ 0.49
VIMP08670 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.14■□□□□ 0.49
VIMP08670 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VIMP08670 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
VIMP08670 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VIMP08670 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VIMP08670 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.14■□□□□ 0.49
VIMP08670 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
VIMP08670 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VIMP08670 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VIMP08670 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.14■□□□□ 0.49
VIMP08670 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
VIMP08670 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VIMP08670 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VIMP08670 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.13■□□□□ 0.49
VIMP08670 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VIMP08670 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.13■□□□□ 0.49
VIMP08670 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VIMP08670 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
VIMP08670 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
VIMP08670 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VIMP08670 AL138688.1-201ENST00000624851 1594 ntBASIC18.13■□□□□ 0.49
VIMP08670 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VIMP08670 AC099343.3-201ENST00000605834 2503 ntBASIC18.13■□□□□ 0.49
VIMP08670 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VIMP08670 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VIMP08670 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VIMP08670 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VIMP08670 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VIMP08670 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC18.13■□□□□ 0.49
VIMP08670 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.13■□□□□ 0.49
VIMP08670 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.13■□□□□ 0.49
VIMP08670 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.13■□□□□ 0.49
VIMP08670 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
VIMP08670 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.13■□□□□ 0.49
VIMP08670 C1QL1P1-201ENST00000568105 661 ntBASIC18.13■□□□□ 0.49
VIMP08670 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
VIMP08670 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
VIMP08670 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VIMP08670 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VIMP08670 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VIMP08670 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
VIMP08670 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VIMP08670 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VIMP08670 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.13■□□□□ 0.49
VIMP08670 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
VIMP08670 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VIMP08670 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VIMP08670 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VIMP08670 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.13■□□□□ 0.49
VIMP08670 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VIMP08670 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
VIMP08670 MST1L-201ENST00000442552 2185 ntBASIC18.13■□□□□ 0.49
VIMP08670 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC18.13■□□□□ 0.49
VIMP08670 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.12■□□□□ 0.49
VIMP08670 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC18.12■□□□□ 0.49
VIMP08670 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
VIMP08670 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
VIMP08670 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.12■□□□□ 0.49
VIMP08670 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 AC026271.2-201ENST00000428091 497 ntBASIC18.12■□□□□ 0.49
VIMP08670 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.12■□□□□ 0.49
VIMP08670 AL162430.1-201ENST00000480705 870 ntBASIC18.12■□□□□ 0.49
VIMP08670 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.12■□□□□ 0.49
VIMP08670 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.12■□□□□ 0.49
VIMP08670 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.12■□□□□ 0.49
VIMP08670 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.12■□□□□ 0.49
VIMP08670 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.12■□□□□ 0.49
VIMP08670 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms