Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
COL4A2P08572 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A2P08572 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.05■□□□□ 0.48
COL4A2P08572 SIRPAP1-201ENST00000448467 1770 ntBASIC18.05■□□□□ 0.48
COL4A2P08572 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A2P08572 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A2P08572 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A2P08572 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A2P08572 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.04■□□□□ 0.48
COL4A2P08572 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A2P08572 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A2P08572 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A2P08572 AC103564.2-201ENST00000432853 1299 ntBASIC18.04■□□□□ 0.48
COL4A2P08572 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.04■□□□□ 0.48
COL4A2P08572 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.04■□□□□ 0.48
COL4A2P08572 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC18.04■□□□□ 0.48
COL4A2P08572 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.04■□□□□ 0.48
COL4A2P08572 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.04■□□□□ 0.48
COL4A2P08572 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A2P08572 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A2P08572 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A2P08572 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.04■□□□□ 0.48
COL4A2P08572 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A2P08572 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A2P08572 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A2P08572 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A2P08572 AL031598.1-201ENST00000561511 1773 ntBASIC18.04■□□□□ 0.48
COL4A2P08572 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A2P08572 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A2P08572 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A2P08572 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
COL4A2P08572 ADH5P3-201ENST00000433842 1137 ntBASIC18.03■□□□□ 0.48
COL4A2P08572 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.03■□□□□ 0.48
COL4A2P08572 AL596442.2-201ENST00000610240 980 ntBASIC18.03■□□□□ 0.48
COL4A2P08572 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.03■□□□□ 0.48
COL4A2P08572 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
COL4A2P08572 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A2P08572 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.03■□□□□ 0.48
COL4A2P08572 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A2P08572 ELL2P1-201ENST00000413990 1906 ntBASIC18.03■□□□□ 0.48
COL4A2P08572 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A2P08572 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A2P08572 PHGDH-209ENST00000641074 1780 ntBASIC18.03■□□□□ 0.48
COL4A2P08572 GPR89P-201ENST00000407924 1495 ntBASIC18.03■□□□□ 0.48
COL4A2P08572 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A2P08572 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A2P08572 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A2P08572 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A2P08572 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A2P08572 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A2P08572 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A2P08572 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
COL4A2P08572 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
COL4A2P08572 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A2P08572 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
COL4A2P08572 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A2P08572 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
COL4A2P08572 RPS15P9-201ENST00000494093 319 ntBASIC18.03■□□□□ 0.48
COL4A2P08572 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A2P08572 AC005829.1-201ENST00000570002 483 ntBASIC18.03■□□□□ 0.48
COL4A2P08572 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
COL4A2P08572 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A2P08572 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A2P08572 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A2P08572 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A2P08572 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A2P08572 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.02■□□□□ 0.48
COL4A2P08572 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A2P08572 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A2P08572 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A2P08572 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A2P08572 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A2P08572 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A2P08572 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A2P08572 PNMT-202ENST00000394246 821 ntTSL 2 BASIC18.02■□□□□ 0.48
COL4A2P08572 AL020989.1-201ENST00000422979 469 ntBASIC18.02■□□□□ 0.48
COL4A2P08572 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.02■□□□□ 0.48
COL4A2P08572 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A2P08572 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.02■□□□□ 0.48
COL4A2P08572 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
COL4A2P08572 PDPK2P-202ENST00000562415 1191 ntBASIC18.02■□□□□ 0.48
COL4A2P08572 LINC02084-201ENST00000606069 1096 ntBASIC18.02■□□□□ 0.48
COL4A2P08572 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.02■□□□□ 0.48
COL4A2P08572 AC116562.4-201ENST00000641316 2276 ntBASIC18.02■□□□□ 0.48
COL4A2P08572 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A2P08572 AC126763.1-201ENST00000552015 2118 ntBASIC18.02■□□□□ 0.48
COL4A2P08572 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL4A2P08572 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL4A2P08572 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL4A2P08572 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.02■□□□□ 0.47
COL4A2P08572 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL4A2P08572 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL4A2P08572 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A2P08572 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A2P08572 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A2P08572 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A2P08572 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A2P08572 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A2P08572 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
COL4A2P08572 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms