Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC15.1■□□□□ 0.01
ABCA1O95477 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.1■□□□□ 0.01
ABCA1O95477 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.1■□□□□ 0.01
ABCA1O95477 AC140113.2-201ENST00000604370 208 ntBASIC15.1■□□□□ 0.01
ABCA1O95477 AL355385.1-201ENST00000606123 409 ntBASIC15.1■□□□□ 0.01
ABCA1O95477 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
ABCA1O95477 ANKRD20A8P-203ENST00000641373 517 ntBASIC15.1■□□□□ 0.01
ABCA1O95477 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC15.1■□□□□ 0.01
ABCA1O95477 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC15.1■□□□□ 0.01
ABCA1O95477 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC15.1■□□□□ 0.01
ABCA1O95477 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
ABCA1O95477 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
ABCA1O95477 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 AC018470.1-201ENST00000624790 3129 ntBASIC15.1■□□□□ 0.01
ABCA1O95477 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
ABCA1O95477 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
ABCA1O95477 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC15.1■□□□□ 0.01
ABCA1O95477 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC15.1■□□□□ 0.01
ABCA1O95477 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC15.1■□□□□ 0.01
ABCA1O95477 AC022898.2-201ENST00000616822 1312 ntBASIC15.09■□□□□ 0.01
ABCA1O95477 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC15.09■□□□□ 0.01
ABCA1O95477 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA1O95477 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
ABCA1O95477 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC15.09■□□□□ 0.01
ABCA1O95477 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA1O95477 AC007613.1-201ENST00000572811 2597 ntBASIC15.09■□□□□ 0.01
ABCA1O95477 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.09■□□□□ 0.01
ABCA1O95477 PAM16-208ENST00000573553 722 ntTSL 2 BASIC15.09■□□□□ 0.01
ABCA1O95477 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA1O95477 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA1O95477 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA1O95477 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA1O95477 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
ABCA1O95477 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC15.09■□□□□ 0.01
ABCA1O95477 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
ABCA1O95477 KRT8P32-201ENST00000512863 1461 ntBASIC15.09■□□□□ 0.01
ABCA1O95477 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA1O95477 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA1O95477 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA1O95477 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA1O95477 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA1O95477 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA1O95477 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA1O95477 MIR940-201ENST00000401276 94 ntBASIC15.09■□□□□ 0.01
ABCA1O95477 SCARNA2-201ENST00000458748 420 ntBASIC15.09■□□□□ 0.01
ABCA1O95477 PRKN-208ENST00000610470 531 ntTSL 2 BASIC15.09■□□□□ 0.01
ABCA1O95477 PRKN-209ENST00000612485 225 ntTSL 5 BASIC15.09■□□□□ 0.01
ABCA1O95477 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.09■□□□□ 0.01
ABCA1O95477 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA1O95477 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA1O95477 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
ABCA1O95477 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC15.09■□□□□ 0.01
ABCA1O95477 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0.01
ABCA1O95477 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
ABCA1O95477 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
ABCA1O95477 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
ABCA1O95477 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
ABCA1O95477 AP005117.1-201ENST00000584346 1413 ntBASIC15.08■□□□□ 0.01
ABCA1O95477 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
ABCA1O95477 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC15.08■□□□□ 0.01
ABCA1O95477 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0.01
ABCA1O95477 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0.01
ABCA1O95477 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0.01
ABCA1O95477 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
ABCA1O95477 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC15.08■□□□□ 0
ABCA1O95477 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC15.08■□□□□ 0
ABCA1O95477 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
ABCA1O95477 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
ABCA1O95477 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
ABCA1O95477 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
ABCA1O95477 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
ABCA1O95477 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC15.08■□□□□ 0
ABCA1O95477 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC15.08■□□□□ 0
ABCA1O95477 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC15.08■□□□□ 0
ABCA1O95477 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC15.08■□□□□ 0
ABCA1O95477 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC15.08■□□□□ 0
ABCA1O95477 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
ABCA1O95477 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC15.08■□□□□ 0
ABCA1O95477 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.08■□□□□ 0
ABCA1O95477 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC15.08■□□□□ 0
ABCA1O95477 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms