Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.41
SIX3O95343 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SIX3O95343 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SIX3O95343 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.64■□□□□ 0.41
SIX3O95343 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.64■□□□□ 0.41
SIX3O95343 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SIX3O95343 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SIX3O95343 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
SIX3O95343 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SIX3O95343 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SIX3O95343 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SIX3O95343 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SIX3O95343 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SIX3O95343 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
SIX3O95343 ECEL1P3-201ENST00000427961 737 ntBASIC17.64■□□□□ 0.41
SIX3O95343 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.64■□□□□ 0.41
SIX3O95343 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.64■□□□□ 0.41
SIX3O95343 AC093827.2-201ENST00000512654 315 ntBASIC17.64■□□□□ 0.41
SIX3O95343 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
SIX3O95343 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.64■□□□□ 0.41
SIX3O95343 AL512604.3-201ENST00000569583 964 ntBASIC17.64■□□□□ 0.41
SIX3O95343 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SIX3O95343 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
SIX3O95343 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.64■□□□□ 0.41
SIX3O95343 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
SIX3O95343 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SIX3O95343 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SIX3O95343 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.64■□□□□ 0.41
SIX3O95343 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
SIX3O95343 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SIX3O95343 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SIX3O95343 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.64■□□□□ 0.41
SIX3O95343 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.64■□□□□ 0.41
SIX3O95343 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.41
SIX3O95343 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SIX3O95343 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SIX3O95343 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SIX3O95343 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.64■□□□□ 0.41
SIX3O95343 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SIX3O95343 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
SIX3O95343 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.63■□□□□ 0.41
SIX3O95343 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SIX3O95343 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SIX3O95343 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SIX3O95343 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.63■□□□□ 0.41
SIX3O95343 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.63■□□□□ 0.41
SIX3O95343 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.63■□□□□ 0.41
SIX3O95343 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.63■□□□□ 0.41
SIX3O95343 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.63■□□□□ 0.41
SIX3O95343 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SIX3O95343 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
SIX3O95343 AC092865.7-201ENST00000641832 219 ntBASIC17.63■□□□□ 0.41
SIX3O95343 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SIX3O95343 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SIX3O95343 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SIX3O95343 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SIX3O95343 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SIX3O95343 AL645608.8-201ENST00000606034 2086 ntBASIC17.63■□□□□ 0.41
SIX3O95343 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
SIX3O95343 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SIX3O95343 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SIX3O95343 AC012313.1-201ENST00000593393 3059 ntBASIC17.63■□□□□ 0.41
SIX3O95343 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SIX3O95343 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
SIX3O95343 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX3O95343 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SIX3O95343 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX3O95343 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX3O95343 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
SIX3O95343 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.62■□□□□ 0.41
SIX3O95343 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SIX3O95343 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX3O95343 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX3O95343 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX3O95343 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.62■□□□□ 0.41
SIX3O95343 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX3O95343 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.62■□□□□ 0.41
SIX3O95343 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SIX3O95343 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.62■□□□□ 0.41
SIX3O95343 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SIX3O95343 DUTP2-201ENST00000519164 463 ntBASIC17.62■□□□□ 0.41
SIX3O95343 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.62■□□□□ 0.41
SIX3O95343 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.62■□□□□ 0.41
SIX3O95343 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.62■□□□□ 0.41
SIX3O95343 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.62■□□□□ 0.41
SIX3O95343 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.62■□□□□ 0.41
SIX3O95343 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX3O95343 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX3O95343 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX3O95343 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.62■□□□□ 0.41
SIX3O95343 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.62■□□□□ 0.41
SIX3O95343 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.62■□□□□ 0.41
SIX3O95343 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
SIX3O95343 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
SIX3O95343 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.62■□□□□ 0.41
SIX3O95343 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX3O95343 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX3O95343 AL355312.1-201ENST00000407115 2176 ntBASIC17.62■□□□□ 0.41
SIX3O95343 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX3O95343 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms