Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF40AO75400 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
PRPF40AO75400 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PRPF40AO75400 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.95
PRPF40AO75400 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
PRPF40AO75400 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF40AO75400 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
PRPF40AO75400 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF40AO75400 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF40AO75400 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF40AO75400 PKD1P1-201ENST00000458669 6805 ntBASIC21.01■□□□□ 0.95
PRPF40AO75400 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF40AO75400 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF40AO75400 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
PRPF40AO75400 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF40AO75400 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF40AO75400 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
PRPF40AO75400 AC012618.2-201ENST00000428058 849 ntBASIC21.01■□□□□ 0.95
PRPF40AO75400 KSR1P1-201ENST00000446298 240 ntBASIC21.01■□□□□ 0.95
PRPF40AO75400 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
PRPF40AO75400 SNORA78-201ENST00000459373 127 ntBASIC21.01■□□□□ 0.95
PRPF40AO75400 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
PRPF40AO75400 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF40AO75400 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF40AO75400 GPAT2P1-201ENST00000444924 1672 ntBASIC21.01■□□□□ 0.95
PRPF40AO75400 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
PRPF40AO75400 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF40AO75400 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF40AO75400 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF40AO75400 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF40AO75400 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC21.01■□□□□ 0.95
PRPF40AO75400 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PRPF40AO75400 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC21.01■□□□□ 0.95
PRPF40AO75400 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC21.01■□□□□ 0.95
PRPF40AO75400 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
PRPF40AO75400 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC21■□□□□ 0.95
PRPF40AO75400 AC093010.1-201ENST00000473625 1624 ntBASIC21■□□□□ 0.95
PRPF40AO75400 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PRPF40AO75400 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC21■□□□□ 0.95
PRPF40AO75400 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC21■□□□□ 0.95
PRPF40AO75400 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
PRPF40AO75400 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PRPF40AO75400 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
PRPF40AO75400 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC21■□□□□ 0.95
PRPF40AO75400 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PRPF40AO75400 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21■□□□□ 0.95
PRPF40AO75400 FAM207BP-201ENST00000447172 505 ntBASIC21■□□□□ 0.95
PRPF40AO75400 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC21■□□□□ 0.95
PRPF40AO75400 FDX2-207ENST00000494368 584 ntTSL 4 BASIC21■□□□□ 0.95
PRPF40AO75400 MIR4497-201ENST00000583208 89 ntBASIC21■□□□□ 0.95
PRPF40AO75400 AC073195.1-201ENST00000607241 877 ntBASIC21■□□□□ 0.95
PRPF40AO75400 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PRPF40AO75400 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC21■□□□□ 0.95
PRPF40AO75400 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
PRPF40AO75400 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PRPF40AO75400 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PRPF40AO75400 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC20.99■□□□□ 0.95
PRPF40AO75400 AL163051.1-201ENST00000569214 1512 ntBASIC20.99■□□□□ 0.95
PRPF40AO75400 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
PRPF40AO75400 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PRPF40AO75400 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
PRPF40AO75400 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PRPF40AO75400 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PRPF40AO75400 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PRPF40AO75400 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.99■□□□□ 0.95
PRPF40AO75400 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.99■□□□□ 0.95
PRPF40AO75400 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PRPF40AO75400 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.99■□□□□ 0.95
PRPF40AO75400 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.99■□□□□ 0.95
PRPF40AO75400 AC233702.5-201ENST00000584107 538 ntBASIC20.99■□□□□ 0.95
PRPF40AO75400 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.99■□□□□ 0.95
PRPF40AO75400 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
PRPF40AO75400 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PRPF40AO75400 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PRPF40AO75400 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC20.99■□□□□ 0.95
PRPF40AO75400 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PRPF40AO75400 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PRPF40AO75400 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PRPF40AO75400 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PRPF40AO75400 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
PRPF40AO75400 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC20.98■□□□□ 0.95
PRPF40AO75400 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC20.98■□□□□ 0.95
PRPF40AO75400 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
PRPF40AO75400 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
PRPF40AO75400 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PRPF40AO75400 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PRPF40AO75400 MCCD1P1-208ENST00000445732 328 ntBASIC20.98■□□□□ 0.95
PRPF40AO75400 AC011506.1-201ENST00000474329 610 ntBASIC20.98■□□□□ 0.95
PRPF40AO75400 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.98■□□□□ 0.95
PRPF40AO75400 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.98■□□□□ 0.95
PRPF40AO75400 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.98■□□□□ 0.95
PRPF40AO75400 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.98■□□□□ 0.95
PRPF40AO75400 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PRPF40AO75400 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC20.98■□□□□ 0.95
PRPF40AO75400 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PRPF40AO75400 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
PRPF40AO75400 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PRPF40AO75400 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PRPF40AO75400 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
PRPF40AO75400 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms