Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSX4O60224 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
SSX4O60224 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSX4O60224 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC16.39■□□□□ 0.21
SSX4O60224 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SSX4O60224 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSX4O60224 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSX4O60224 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSX4O60224 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SSX4O60224 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SSX4O60224 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSX4O60224 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC16.39■□□□□ 0.21
SSX4O60224 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC16.39■□□□□ 0.21
SSX4O60224 PTPA-216ENST00000432651 857 ntTSL 2 BASIC16.39■□□□□ 0.21
SSX4O60224 BX664615.1-201ENST00000443558 458 ntBASIC16.39■□□□□ 0.21
SSX4O60224 CCR12P-201ENST00000446203 998 ntBASIC16.39■□□□□ 0.21
SSX4O60224 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC16.39■□□□□ 0.21
SSX4O60224 AC008040.2-201ENST00000461049 708 ntBASIC16.39■□□□□ 0.21
SSX4O60224 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.39■□□□□ 0.21
SSX4O60224 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSX4O60224 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC16.39■□□□□ 0.21
SSX4O60224 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SSX4O60224 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC16.39■□□□□ 0.21
SSX4O60224 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC16.39■□□□□ 0.21
SSX4O60224 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
SSX4O60224 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSX4O60224 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSX4O60224 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SSX4O60224 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.39■□□□□ 0.21
SSX4O60224 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSX4O60224 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SSX4O60224 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.39■□□□□ 0.21
SSX4O60224 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSX4O60224 COBL-210ENST00000632460 1941 ntTSL 5 BASIC16.39■□□□□ 0.21
SSX4O60224 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SSX4O60224 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SSX4O60224 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.39■□□□□ 0.21
SSX4O60224 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SSX4O60224 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SSX4O60224 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSX4O60224 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSX4O60224 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SSX4O60224 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSX4O60224 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SSX4O60224 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SSX4O60224 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.38■□□□□ 0.21
SSX4O60224 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SSX4O60224 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSX4O60224 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSX4O60224 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSX4O60224 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SSX4O60224 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SSX4O60224 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSX4O60224 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC16.38■□□□□ 0.21
SSX4O60224 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SSX4O60224 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SSX4O60224 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC16.38■□□□□ 0.21
SSX4O60224 HMGA1P5-201ENST00000412453 271 ntBASIC16.38■□□□□ 0.21
SSX4O60224 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC16.38■□□□□ 0.21
SSX4O60224 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SSX4O60224 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC16.38■□□□□ 0.21
SSX4O60224 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC16.38■□□□□ 0.21
SSX4O60224 FAM87A-204ENST00000613235 858 ntBASIC16.38■□□□□ 0.21
SSX4O60224 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.38■□□□□ 0.21
SSX4O60224 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SSX4O60224 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC16.38■□□□□ 0.21
SSX4O60224 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.38■□□□□ 0.21
SSX4O60224 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.38■□□□□ 0.21
SSX4O60224 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.38■□□□□ 0.21
SSX4O60224 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.38■□□□□ 0.21
SSX4O60224 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SSX4O60224 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSX4O60224 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.38■□□□□ 0.21
SSX4O60224 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SSX4O60224 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
SSX4O60224 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC16.37■□□□□ 0.21
SSX4O60224 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SSX4O60224 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SSX4O60224 KRT8P8-201ENST00000434750 1448 ntBASIC16.37■□□□□ 0.21
SSX4O60224 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SSX4O60224 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SSX4O60224 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
SSX4O60224 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SSX4O60224 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC16.37■□□□□ 0.21
SSX4O60224 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
SSX4O60224 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SSX4O60224 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC16.37■□□□□ 0.21
SSX4O60224 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SSX4O60224 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SSX4O60224 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC16.37■□□□□ 0.21
SSX4O60224 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC16.37■□□□□ 0.21
SSX4O60224 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
SSX4O60224 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.37■□□□□ 0.21
SSX4O60224 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.37■□□□□ 0.21
SSX4O60224 LINC01238-205ENST00000567549 1107 ntBASIC16.37■□□□□ 0.21
SSX4O60224 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.37■□□□□ 0.21
SSX4O60224 GPX4-207ENST00000589115 812 ntTSL 2 BASIC16.37■□□□□ 0.21
SSX4O60224 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SSX4O60224 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SSX4O60224 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms