Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 NME4-212ENST00000621774 904 ntTSL 3 BASIC18.31■□□□□ 0.52
HOXC11O43248 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.31■□□□□ 0.52
HOXC11O43248 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC11O43248 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.31■□□□□ 0.52
HOXC11O43248 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.31■□□□□ 0.52
HOXC11O43248 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC11O43248 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC11O43248 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC11O43248 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC11O43248 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
HOXC11O43248 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
HOXC11O43248 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
HOXC11O43248 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC11O43248 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC11O43248 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.31■□□□□ 0.52
HOXC11O43248 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.31■□□□□ 0.52
HOXC11O43248 AC243591.1-201ENST00000452967 1364 ntBASIC18.3■□□□□ 0.52
HOXC11O43248 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC11O43248 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC11O43248 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.3■□□□□ 0.52
HOXC11O43248 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC11O43248 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC11O43248 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.3■□□□□ 0.52
HOXC11O43248 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC11O43248 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC11O43248 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
HOXC11O43248 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC11O43248 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC11O43248 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC11O43248 HNRNPDP1-201ENST00000439535 754 ntBASIC18.3■□□□□ 0.52
HOXC11O43248 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.3■□□□□ 0.52
HOXC11O43248 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.3■□□□□ 0.52
HOXC11O43248 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.3■□□□□ 0.52
HOXC11O43248 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC11O43248 SART3-203ENST00000546611 1184 ntBASIC18.3■□□□□ 0.52
HOXC11O43248 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.3■□□□□ 0.52
HOXC11O43248 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.3■□□□□ 0.52
HOXC11O43248 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
HOXC11O43248 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.3■□□□□ 0.52
HOXC11O43248 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC11O43248 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
HOXC11O43248 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC11O43248 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
HOXC11O43248 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
HOXC11O43248 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC11O43248 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC11O43248 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.3■□□□□ 0.52
HOXC11O43248 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC11O43248 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC11O43248 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.3■□□□□ 0.52
HOXC11O43248 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC11O43248 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC11O43248 AL356309.3-201ENST00000624132 1934 ntBASIC18.29■□□□□ 0.52
HOXC11O43248 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC11O43248 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC11O43248 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC11O43248 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC11O43248 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
HOXC11O43248 RPS2P28-201ENST00000314255 741 ntBASIC18.29■□□□□ 0.52
HOXC11O43248 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
HOXC11O43248 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HOXC11O43248 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC11O43248 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.29■□□□□ 0.52
HOXC11O43248 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC11O43248 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC11O43248 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.29■□□□□ 0.52
HOXC11O43248 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.29■□□□□ 0.52
HOXC11O43248 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.29■□□□□ 0.52
HOXC11O43248 AC021087.4-201ENST00000563761 564 ntBASIC18.29■□□□□ 0.52
HOXC11O43248 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.29■□□□□ 0.52
HOXC11O43248 AL671883.3-201ENST00000603274 991 ntBASIC18.29■□□□□ 0.52
HOXC11O43248 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.29■□□□□ 0.52
HOXC11O43248 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.29■□□□□ 0.52
HOXC11O43248 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.29■□□□□ 0.52
HOXC11O43248 AL139288.1-201ENST00000623748 933 ntBASIC18.29■□□□□ 0.52
HOXC11O43248 AP000867.4-201ENST00000641616 219 ntBASIC18.29■□□□□ 0.52
HOXC11O43248 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
HOXC11O43248 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.29■□□□□ 0.52
HOXC11O43248 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC11O43248 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC11O43248 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
HOXC11O43248 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC11O43248 KRT8P47-201ENST00000604727 1398 ntBASIC18.29■□□□□ 0.52
HOXC11O43248 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC11O43248 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC11O43248 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC11O43248 AC022898.2-201ENST00000616822 1312 ntBASIC18.28■□□□□ 0.52
HOXC11O43248 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
HOXC11O43248 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC11O43248 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.28■□□□□ 0.52
HOXC11O43248 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC11O43248 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.28■□□□□ 0.52
HOXC11O43248 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.28■□□□□ 0.52
HOXC11O43248 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.28■□□□□ 0.52
HOXC11O43248 AC139887.3-201ENST00000568585 713 ntBASIC18.28■□□□□ 0.52
HOXC11O43248 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.28■□□□□ 0.52
HOXC11O43248 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.28■□□□□ 0.52
HOXC11O43248 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
HOXC11O43248 AL049840.3-201ENST00000602669 611 ntBASIC18.28■□□□□ 0.52
HOXC11O43248 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms