Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGB3O15347 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
HMGB3O15347 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGB3O15347 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC14.53□□□□□ -0.08
HMGB3O15347 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HMGB3O15347 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
HMGB3O15347 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGB3O15347 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGB3O15347 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGB3O15347 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC14.53□□□□□ -0.08
HMGB3O15347 OR2A1-AS1-201ENST00000462305 773 ntBASIC14.53□□□□□ -0.08
HMGB3O15347 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC14.53□□□□□ -0.08
HMGB3O15347 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC14.53□□□□□ -0.08
HMGB3O15347 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC14.53□□□□□ -0.08
HMGB3O15347 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC14.53□□□□□ -0.08
HMGB3O15347 RAP2CP1-201ENST00000605103 478 ntBASIC14.53□□□□□ -0.08
HMGB3O15347 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGB3O15347 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGB3O15347 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
HMGB3O15347 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HMGB3O15347 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC14.53□□□□□ -0.08
HMGB3O15347 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HMGB3O15347 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
HMGB3O15347 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HMGB3O15347 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HMGB3O15347 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGB3O15347 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HMGB3O15347 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGB3O15347 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGB3O15347 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HMGB3O15347 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC14.53□□□□□ -0.08
HMGB3O15347 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
HMGB3O15347 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
HMGB3O15347 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC14.52□□□□□ -0.08
HMGB3O15347 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
HMGB3O15347 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HMGB3O15347 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
HMGB3O15347 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC14.52□□□□□ -0.08
HMGB3O15347 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HMGB3O15347 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
HMGB3O15347 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.08
HMGB3O15347 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HMGB3O15347 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
HMGB3O15347 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HMGB3O15347 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HMGB3O15347 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC14.52□□□□□ -0.09
HMGB3O15347 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HMGB3O15347 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC14.52□□□□□ -0.09
HMGB3O15347 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
HMGB3O15347 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC14.52□□□□□ -0.09
HMGB3O15347 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
HMGB3O15347 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
HMGB3O15347 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC14.52□□□□□ -0.09
HMGB3O15347 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HMGB3O15347 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC14.52□□□□□ -0.09
HMGB3O15347 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
HMGB3O15347 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC14.52□□□□□ -0.09
HMGB3O15347 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC14.52□□□□□ -0.09
HMGB3O15347 MYC-208ENST00000641036 567 ntBASIC14.52□□□□□ -0.09
HMGB3O15347 AC068587.9-201ENST00000641814 219 ntBASIC14.52□□□□□ -0.09
HMGB3O15347 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HMGB3O15347 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HMGB3O15347 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HMGB3O15347 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HMGB3O15347 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.09
HMGB3O15347 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC14.52□□□□□ -0.09
HMGB3O15347 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HMGB3O15347 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC14.52□□□□□ -0.09
HMGB3O15347 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC14.52□□□□□ -0.09
HMGB3O15347 AC018695.7-201ENST00000624587 2492 ntBASIC14.52□□□□□ -0.09
HMGB3O15347 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HMGB3O15347 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HMGB3O15347 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HMGB3O15347 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HMGB3O15347 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HMGB3O15347 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HMGB3O15347 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC14.51□□□□□ -0.09
HMGB3O15347 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 STK4-201ENST00000372801 2038 ntTSL 2 BASIC14.51□□□□□ -0.09
HMGB3O15347 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
HMGB3O15347 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
HMGB3O15347 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
HMGB3O15347 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC14.51□□□□□ -0.09
HMGB3O15347 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGB3O15347 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
HMGB3O15347 BX276092.2-201ENST00000417668 665 ntBASIC14.51□□□□□ -0.09
HMGB3O15347 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC14.51□□□□□ -0.09
HMGB3O15347 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC14.51□□□□□ -0.09
HMGB3O15347 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC14.51□□□□□ -0.09
HMGB3O15347 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms