Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TMX2-CTNND1H3BSU7 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.71■□□□□ 0.43
TMX2-CTNND1H3BSU7 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
TMX2-CTNND1H3BSU7 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
TMX2-CTNND1H3BSU7 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 AC233702.3-201ENST00000578656 1387 ntBASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 IGHGP-201ENST00000390555 1178 ntBASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.7■□□□□ 0.42
TMX2-CTNND1H3BSU7 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 PCDHA12-202ENST00000613593 2588 ntBASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
TMX2-CTNND1H3BSU7 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TMX2-CTNND1H3BSU7 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TMX2-CTNND1H3BSU7 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
TMX2-CTNND1H3BSU7 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.68■□□□□ 0.42
TMX2-CTNND1H3BSU7 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TMX2-CTNND1H3BSU7 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms