Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC85CA6NKD9 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.76
CCDC85CA6NKD9 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC85CA6NKD9 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC85CA6NKD9 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.76
CCDC85CA6NKD9 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC85CA6NKD9 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 INO80E-210ENST00000567705 880 ntTSL 3 BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 GGTLC5P-201ENST00000617623 998 ntBASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 AC099343.3-201ENST00000605834 2503 ntBASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC85CA6NKD9 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 ADM-208ENST00000534464 1640 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 CALY-202ENST00000368555 783 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 MXI1-205ENST00000393134 889 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 AC079776.1-201ENST00000401540 1152 ntBASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 MRPS18AP1-201ENST00000414458 589 ntBASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 AL355306.1-201ENST00000415580 579 ntBASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 AC112492.5-201ENST00000421897 457 ntBASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 GPS2P2-201ENST00000430745 888 ntBASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 AC004890.2-204ENST00000481968 304 ntBASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 CXCL1P1-201ENST00000502804 216 ntBASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 CDK4-206ENST00000549606 558 ntTSL 2 BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 RAB43P1-201ENST00000561790 589 ntBASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CCDC85CA6NKD9 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
CCDC85CA6NKD9 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC85CA6NKD9 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.8■□□□□ 0.76
CCDC85CA6NKD9 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC85CA6NKD9 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CCDC85CA6NKD9 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC85CA6NKD9 MIR149-201ENST00000384879 89 ntBASIC19.8■□□□□ 0.76
CCDC85CA6NKD9 AC002056.1-201ENST00000395613 760 ntBASIC19.8■□□□□ 0.76
CCDC85CA6NKD9 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC85CA6NKD9 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC85CA6NKD9 AC079140.1-201ENST00000508039 487 ntBASIC19.8■□□□□ 0.76
CCDC85CA6NKD9 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC85CA6NKD9 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC19.8■□□□□ 0.76
CCDC85CA6NKD9 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC19.8■□□□□ 0.76
CCDC85CA6NKD9 IGHV3-72-202ENST00000621503 303 ntBASIC19.8■□□□□ 0.76
CCDC85CA6NKD9 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC19.8■□□□□ 0.76
CCDC85CA6NKD9 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC85CA6NKD9 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CCDC85CA6NKD9 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.8■□□□□ 0.76
CCDC85CA6NKD9 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC85CA6NKD9 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC85CA6NKD9 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CCDC85CA6NKD9 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC85CA6NKD9 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC85CA6NKD9 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC85CA6NKD9 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC85CA6NKD9 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC85CA6NKD9 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms