Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TCRBV7S3A2A0A539 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 LINC00602-201ENST00000629776 2065 ntBASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 ECEL1P3-201ENST00000427961 737 ntBASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 NEK4P2-201ENST00000580004 1012 ntBASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TCRBV7S3A2A0A539 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.33■□□□□ 0.53
TCRBV7S3A2A0A539 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
TCRBV7S3A2A0A539 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.33■□□□□ 0.53
TCRBV7S3A2A0A539 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.33■□□□□ 0.53
TCRBV7S3A2A0A539 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
TCRBV7S3A2A0A539 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.33■□□□□ 0.53
TCRBV7S3A2A0A539 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TCRBV7S3A2A0A539 SIRPAP1-201ENST00000448467 1770 ntBASIC18.33■□□□□ 0.53
TCRBV7S3A2A0A539 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TCRBV7S3A2A0A539 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TCRBV7S3A2A0A539 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.33■□□□□ 0.52
TCRBV7S3A2A0A539 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
TCRBV7S3A2A0A539 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
TCRBV7S3A2A0A539 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
TCRBV7S3A2A0A539 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.33■□□□□ 0.52
TCRBV7S3A2A0A539 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.33■□□□□ 0.52
TCRBV7S3A2A0A539 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.33■□□□□ 0.52
TCRBV7S3A2A0A539 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.33■□□□□ 0.52
TCRBV7S3A2A0A539 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TCRBV7S3A2A0A539 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
TCRBV7S3A2A0A539 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.33■□□□□ 0.52
TCRBV7S3A2A0A539 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
TCRBV7S3A2A0A539 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.33■□□□□ 0.52
TCRBV7S3A2A0A539 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
TCRBV7S3A2A0A539 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
TCRBV7S3A2A0A539 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TCRBV7S3A2A0A539 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TCRBV7S3A2A0A539 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 LINC01568-207ENST00000641790 1380 ntBASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 PVRIG2P-201ENST00000435460 978 ntBASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 AC092865.7-201ENST00000641832 219 ntBASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
TCRBV7S3A2A0A539 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms