Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 AC006116.8-202ENST00000587620 1550 ntBASIC14.63□□□□□ -0.07
FOXA2Q9Y261 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 LGALS8-AS1-201ENST00000487567 1457 ntBASIC14.63□□□□□ -0.07
FOXA2Q9Y261 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 ASL-204ENST00000395331 1538 ntTSL 5 BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 AC005521.1-201ENST00000393351 872 ntBASIC14.62□□□□□ -0.07
FOXA2Q9Y261 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 KIRREL3-AS3-201ENST00000404882 831 ntBASIC14.62□□□□□ -0.07
FOXA2Q9Y261 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 AC009947.2-201ENST00000444014 672 ntBASIC14.62□□□□□ -0.07
FOXA2Q9Y261 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 AC010203.1-204ENST00000548782 407 ntBASIC14.62□□□□□ -0.07
FOXA2Q9Y261 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 P4HB-223ENST00000576390 439 ntTSL 4 BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 NEK4P2-201ENST00000580004 1012 ntBASIC14.62□□□□□ -0.07
FOXA2Q9Y261 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
FOXA2Q9Y261 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 SP100-208ENST00000427101 1922 ntTSL 2 BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 GRAMD4P1-201ENST00000435181 1110 ntBASIC14.61□□□□□ -0.07
FOXA2Q9Y261 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 MIR3180-4-201ENST00000582223 153 ntBASIC14.61□□□□□ -0.07
FOXA2Q9Y261 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 AC141257.4-201ENST00000634557 245 ntBASIC14.61□□□□□ -0.07
FOXA2Q9Y261 AC136944.6-201ENST00000634818 245 ntBASIC14.61□□□□□ -0.07
FOXA2Q9Y261 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA2Q9Y261 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA2Q9Y261 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA2Q9Y261 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms