Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC15.59■□□□□ 0.09
CHMP1AQ9HD42 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
CHMP1AQ9HD42 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC15.58■□□□□ 0.09
CHMP1AQ9HD42 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
CHMP1AQ9HD42 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
CHMP1AQ9HD42 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CHMP1AQ9HD42 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CHMP1AQ9HD42 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC15.58■□□□□ 0.09
CHMP1AQ9HD42 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC15.58■□□□□ 0.09
CHMP1AQ9HD42 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.58■□□□□ 0.09
CHMP1AQ9HD42 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
CHMP1AQ9HD42 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.09
CHMP1AQ9HD42 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
CHMP1AQ9HD42 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CHMP1AQ9HD42 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
CHMP1AQ9HD42 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 ADM-205ENST00000528544 586 ntTSL 2 BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 FAM197Y4-202ENST00000622692 608 ntBASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 AC084018.2-201ENST00000613093 2607 ntBASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CHMP1AQ9HD42 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 SLC25A6P5-201ENST00000435663 894 ntBASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 AC128676.1-201ENST00000454392 318 ntBASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 TK2-204ENST00000525974 1178 ntTSL 2 BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 RPS15-203ENST00000586096 570 ntTSL 2 BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 AC073195.1-201ENST00000607241 877 ntBASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 FLYWCH1P1-201ENST00000460917 1874 ntBASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.57■□□□□ 0.08
CHMP1AQ9HD42 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC15.56■□□□□ 0.08
CHMP1AQ9HD42 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms