Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.46
TRIM39Q9HCM9 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
TRIM39Q9HCM9 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
TRIM39Q9HCM9 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 AC009113.1-201ENST00000570267 2443 ntBASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 RN7SL606P-201ENST00000472779 293 ntBASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 KRT18P1-202ENST00000452408 1331 ntBASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 AC005332.8-201ENST00000622750 2735 ntBASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 LINC00167-201ENST00000530583 1419 ntBASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TRIM39Q9HCM9 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 AC093677.2-201ENST00000600169 1863 ntBASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 AP002414.4-201ENST00000589764 1148 ntBASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 AC124864.1-201ENST00000623408 392 ntBASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TRIM39Q9HCM9 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 AC135776.1-201ENST00000319817 2481 ntBASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 DRAXINP1-201ENST00000437611 948 ntBASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 MIR3180-1-201ENST00000580374 94 ntBASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 MIR3180-3-201ENST00000584616 94 ntBASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 AC092329.2-201ENST00000598402 547 ntBASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 AC009154.2-201ENST00000621177 724 ntBASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms