Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP28Q96RU2 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.66■□□□□ 0.9
USP28Q96RU2 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP28Q96RU2 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP28Q96RU2 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.66■□□□□ 0.9
USP28Q96RU2 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
USP28Q96RU2 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC20.66■□□□□ 0.9
USP28Q96RU2 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP28Q96RU2 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP28Q96RU2 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP28Q96RU2 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP28Q96RU2 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
USP28Q96RU2 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
USP28Q96RU2 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.65■□□□□ 0.9
USP28Q96RU2 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP28Q96RU2 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP28Q96RU2 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP28Q96RU2 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
USP28Q96RU2 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP28Q96RU2 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP28Q96RU2 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.65■□□□□ 0.9
USP28Q96RU2 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP28Q96RU2 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.65■□□□□ 0.9
USP28Q96RU2 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC20.65■□□□□ 0.9
USP28Q96RU2 AC093827.2-201ENST00000512654 315 ntBASIC20.65■□□□□ 0.9
USP28Q96RU2 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.65■□□□□ 0.9
USP28Q96RU2 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.65■□□□□ 0.9
USP28Q96RU2 AL138966.2-201ENST00000621997 464 ntBASIC20.65■□□□□ 0.9
USP28Q96RU2 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC20.65■□□□□ 0.9
USP28Q96RU2 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP28Q96RU2 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
USP28Q96RU2 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP28Q96RU2 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
USP28Q96RU2 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
USP28Q96RU2 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP28Q96RU2 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP28Q96RU2 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP28Q96RU2 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC20.64■□□□□ 0.9
USP28Q96RU2 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
USP28Q96RU2 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.64■□□□□ 0.9
USP28Q96RU2 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
USP28Q96RU2 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
USP28Q96RU2 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
USP28Q96RU2 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
USP28Q96RU2 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP28Q96RU2 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.64■□□□□ 0.89
USP28Q96RU2 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP28Q96RU2 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.64■□□□□ 0.89
USP28Q96RU2 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP28Q96RU2 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP28Q96RU2 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP28Q96RU2 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP28Q96RU2 GCSHP2-201ENST00000560971 527 ntBASIC20.64■□□□□ 0.89
USP28Q96RU2 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.64■□□□□ 0.89
USP28Q96RU2 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.64■□□□□ 0.89
USP28Q96RU2 AC141257.4-201ENST00000634557 245 ntBASIC20.64■□□□□ 0.89
USP28Q96RU2 AC136944.6-201ENST00000634818 245 ntBASIC20.64■□□□□ 0.89
USP28Q96RU2 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.64■□□□□ 0.89
USP28Q96RU2 LINC00602-201ENST00000629776 2065 ntBASIC20.64■□□□□ 0.89
USP28Q96RU2 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.64■□□□□ 0.89
USP28Q96RU2 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP28Q96RU2 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
USP28Q96RU2 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.64■□□□□ 0.89
USP28Q96RU2 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP28Q96RU2 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP28Q96RU2 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
USP28Q96RU2 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP28Q96RU2 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP28Q96RU2 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.64■□□□□ 0.89
USP28Q96RU2 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC20.63■□□□□ 0.89
USP28Q96RU2 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP28Q96RU2 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC20.63■□□□□ 0.89
USP28Q96RU2 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP28Q96RU2 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC20.63■□□□□ 0.89
USP28Q96RU2 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP28Q96RU2 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
USP28Q96RU2 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP28Q96RU2 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP28Q96RU2 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.63■□□□□ 0.89
USP28Q96RU2 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.63■□□□□ 0.89
USP28Q96RU2 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.63■□□□□ 0.89
USP28Q96RU2 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.63■□□□□ 0.89
USP28Q96RU2 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.63■□□□□ 0.89
USP28Q96RU2 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP28Q96RU2 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
USP28Q96RU2 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC20.63■□□□□ 0.89
USP28Q96RU2 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.63■□□□□ 0.89
USP28Q96RU2 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP28Q96RU2 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP28Q96RU2 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
USP28Q96RU2 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP28Q96RU2 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP28Q96RU2 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP28Q96RU2 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP28Q96RU2 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP28Q96RU2 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
USP28Q96RU2 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
USP28Q96RU2 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP28Q96RU2 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP28Q96RU2 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms