Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL21A1Q96P44 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.1■□□□□ 0.33
COL21A1Q96P44 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL21A1Q96P44 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 LINC00896-202ENST00000609602 2128 ntBASIC17.09■□□□□ 0.33
COL21A1Q96P44 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.09■□□□□ 0.33
COL21A1Q96P44 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
COL21A1Q96P44 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.09■□□□□ 0.33
COL21A1Q96P44 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 TMPOP1-202ENST00000424642 1267 ntBASIC17.09■□□□□ 0.33
COL21A1Q96P44 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.09■□□□□ 0.33
COL21A1Q96P44 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.09■□□□□ 0.33
COL21A1Q96P44 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.09■□□□□ 0.33
COL21A1Q96P44 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.09■□□□□ 0.33
COL21A1Q96P44 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.09■□□□□ 0.33
COL21A1Q96P44 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.09■□□□□ 0.33
COL21A1Q96P44 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.09■□□□□ 0.33
COL21A1Q96P44 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
COL21A1Q96P44 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
COL21A1Q96P44 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL21A1Q96P44 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL21A1Q96P44 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL21A1Q96P44 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
COL21A1Q96P44 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL21A1Q96P44 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.08■□□□□ 0.33
COL21A1Q96P44 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL21A1Q96P44 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.08■□□□□ 0.33
COL21A1Q96P44 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.08■□□□□ 0.32
COL21A1Q96P44 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
COL21A1Q96P44 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.08■□□□□ 0.32
COL21A1Q96P44 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL21A1Q96P44 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL21A1Q96P44 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL21A1Q96P44 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.08■□□□□ 0.32
COL21A1Q96P44 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL21A1Q96P44 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL21A1Q96P44 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL21A1Q96P44 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.08■□□□□ 0.32
COL21A1Q96P44 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL21A1Q96P44 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.08■□□□□ 0.32
COL21A1Q96P44 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.08■□□□□ 0.32
COL21A1Q96P44 AC139887.4-201ENST00000607877 719 ntBASIC17.08■□□□□ 0.32
COL21A1Q96P44 AC024243.1-201ENST00000609234 778 ntBASIC17.08■□□□□ 0.32
COL21A1Q96P44 AL023973.1-201ENST00000624619 620 ntBASIC17.08■□□□□ 0.32
COL21A1Q96P44 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL21A1Q96P44 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL21A1Q96P44 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
COL21A1Q96P44 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL21A1Q96P44 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL21A1Q96P44 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL21A1Q96P44 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL21A1Q96P44 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL21A1Q96P44 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL21A1Q96P44 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
COL21A1Q96P44 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.07■□□□□ 0.32
COL21A1Q96P44 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.07■□□□□ 0.32
COL21A1Q96P44 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL21A1Q96P44 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL21A1Q96P44 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL21A1Q96P44 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL21A1Q96P44 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL21A1Q96P44 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL21A1Q96P44 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL21A1Q96P44 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
COL21A1Q96P44 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
COL21A1Q96P44 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.07■□□□□ 0.32
COL21A1Q96P44 FAM210CP-201ENST00000445714 574 ntBASIC17.07■□□□□ 0.32
COL21A1Q96P44 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.07■□□□□ 0.32
COL21A1Q96P44 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL21A1Q96P44 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL21A1Q96P44 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.07■□□□□ 0.32
COL21A1Q96P44 YBX1P2-201ENST00000489612 999 ntBASIC17.07■□□□□ 0.32
COL21A1Q96P44 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.07■□□□□ 0.32
COL21A1Q96P44 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL21A1Q96P44 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.07■□□□□ 0.32
COL21A1Q96P44 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL21A1Q96P44 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
COL21A1Q96P44 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL21A1Q96P44 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
COL21A1Q96P44 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms