Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
PTCHD1Q96NR3 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 LINC00602-201ENST00000629776 2065 ntBASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 BICD1-207ENST00000551848 1962 ntBASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 CHCHD2P8-201ENST00000429873 447 ntBASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 GUSBP12-201ENST00000513727 720 ntBASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 AC090616.6-201ENST00000582640 721 ntBASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD1Q96NR3 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 AL390961.4-201ENST00000623958 2535 ntBASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD1Q96NR3 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.02■□□□□ 0.31
PTCHD1Q96NR3 AC018470.1-201ENST00000624790 3129 ntBASIC17.02■□□□□ 0.31
PTCHD1Q96NR3 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.31
PTCHD1Q96NR3 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
PTCHD1Q96NR3 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PTCHD1Q96NR3 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
PTCHD1Q96NR3 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PTCHD1Q96NR3 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 KRT18P1-202ENST00000452408 1331 ntBASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 TSPY12P-201ENST00000421279 868 ntBASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 PHGDH-209ENST00000641074 1780 ntBASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD1Q96NR3 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms