Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
RTF1Q92541 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC23.5■■□□□ 1.35
RTF1Q92541 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
RTF1Q92541 HCG11-201ENST00000411553 5696 ntBASIC23.5■■□□□ 1.35
RTF1Q92541 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC23.5■■□□□ 1.35
RTF1Q92541 FDX1P1-201ENST00000449115 551 ntBASIC23.5■■□□□ 1.35
RTF1Q92541 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC23.5■■□□□ 1.35
RTF1Q92541 WDR88-203ENST00000592765 651 ntTSL 5 BASIC23.5■■□□□ 1.35
RTF1Q92541 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
RTF1Q92541 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
RTF1Q92541 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
RTF1Q92541 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
RTF1Q92541 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC23.5■■□□□ 1.35
RTF1Q92541 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC23.5■■□□□ 1.35
RTF1Q92541 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC23.5■■□□□ 1.35
RTF1Q92541 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
RTF1Q92541 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC23.5■■□□□ 1.35
RTF1Q92541 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
RTF1Q92541 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC23.5■■□□□ 1.35
RTF1Q92541 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
RTF1Q92541 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC23.5■■□□□ 1.35
RTF1Q92541 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
RTF1Q92541 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
RTF1Q92541 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
RTF1Q92541 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
RTF1Q92541 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC23.49■■□□□ 1.35
RTF1Q92541 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC23.49■■□□□ 1.35
RTF1Q92541 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
RTF1Q92541 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
RTF1Q92541 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC23.49■■□□□ 1.35
RTF1Q92541 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC23.49■■□□□ 1.35
RTF1Q92541 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
RTF1Q92541 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
RTF1Q92541 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC23.49■■□□□ 1.35
RTF1Q92541 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC23.49■■□□□ 1.35
RTF1Q92541 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC23.49■■□□□ 1.35
RTF1Q92541 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC23.49■■□□□ 1.35
RTF1Q92541 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC23.49■■□□□ 1.35
RTF1Q92541 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
RTF1Q92541 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
RTF1Q92541 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
RTF1Q92541 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC23.48■■□□□ 1.35
RTF1Q92541 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC23.48■■□□□ 1.35
RTF1Q92541 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
RTF1Q92541 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
RTF1Q92541 AL138781.2-201ENST00000617896 1843 ntBASIC23.48■■□□□ 1.35
RTF1Q92541 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
RTF1Q92541 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC23.48■■□□□ 1.35
RTF1Q92541 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC23.48■■□□□ 1.35
RTF1Q92541 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
RTF1Q92541 AC132008.2-207ENST00000454517 770 ntBASIC23.48■■□□□ 1.35
RTF1Q92541 AF238378.1-201ENST00000526806 358 ntBASIC23.48■■□□□ 1.35
RTF1Q92541 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC23.48■■□□□ 1.35
RTF1Q92541 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC23.48■■□□□ 1.35
RTF1Q92541 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
RTF1Q92541 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC23.48■■□□□ 1.35
RTF1Q92541 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
RTF1Q92541 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
RTF1Q92541 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
RTF1Q92541 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
RTF1Q92541 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
RTF1Q92541 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC23.48■■□□□ 1.35
RTF1Q92541 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC23.48■■□□□ 1.35
RTF1Q92541 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC23.48■■□□□ 1.35
RTF1Q92541 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
RTF1Q92541 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
RTF1Q92541 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
RTF1Q92541 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
RTF1Q92541 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
RTF1Q92541 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
RTF1Q92541 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
RTF1Q92541 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
RTF1Q92541 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC23.47■■□□□ 1.35
RTF1Q92541 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
RTF1Q92541 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
RTF1Q92541 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
RTF1Q92541 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
RTF1Q92541 AC009078.2-202ENST00000463353 338 ntBASIC23.47■■□□□ 1.35
RTF1Q92541 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC23.47■■□□□ 1.35
RTF1Q92541 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC23.47■■□□□ 1.35
RTF1Q92541 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
RTF1Q92541 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
RTF1Q92541 AC011467.2-201ENST00000598425 242 ntBASIC23.47■■□□□ 1.35
RTF1Q92541 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC23.47■■□□□ 1.35
RTF1Q92541 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC23.47■■□□□ 1.35
RTF1Q92541 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
RTF1Q92541 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
RTF1Q92541 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
RTF1Q92541 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
RTF1Q92541 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC23.47■■□□□ 1.35
RTF1Q92541 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
RTF1Q92541 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
RTF1Q92541 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
RTF1Q92541 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
RTF1Q92541 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
RTF1Q92541 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
RTF1Q92541 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC23.47■■□□□ 1.35
RTF1Q92541 SP100-208ENST00000427101 1922 ntTSL 2 BASIC23.47■■□□□ 1.35
RTF1Q92541 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
RTF1Q92541 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms