Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
USP48Q86UV5 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
USP48Q86UV5 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
USP48Q86UV5 AC073648.2-201ENST00000510116 352 ntBASIC22.11■■□□□ 1.13
USP48Q86UV5 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC22.11■■□□□ 1.13
USP48Q86UV5 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC22.11■■□□□ 1.13
USP48Q86UV5 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC22.11■■□□□ 1.13
USP48Q86UV5 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC22.11■■□□□ 1.13
USP48Q86UV5 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
USP48Q86UV5 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC22.11■■□□□ 1.13
USP48Q86UV5 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
USP48Q86UV5 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
USP48Q86UV5 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC22.11■■□□□ 1.13
USP48Q86UV5 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC22.11■■□□□ 1.13
USP48Q86UV5 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC22.11■■□□□ 1.13
USP48Q86UV5 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
USP48Q86UV5 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC22.11■■□□□ 1.13
USP48Q86UV5 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC22.11■■□□□ 1.13
USP48Q86UV5 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC22.11■■□□□ 1.13
USP48Q86UV5 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
USP48Q86UV5 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC22.11■■□□□ 1.13
USP48Q86UV5 UBQLN4P1-201ENST00000461599 1801 ntBASIC22.1■■□□□ 1.13
USP48Q86UV5 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
USP48Q86UV5 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC22.1■■□□□ 1.13
USP48Q86UV5 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC22.1■■□□□ 1.13
USP48Q86UV5 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC22.1■■□□□ 1.13
USP48Q86UV5 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
USP48Q86UV5 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC22.1■■□□□ 1.13
USP48Q86UV5 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
USP48Q86UV5 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC22.1■■□□□ 1.13
USP48Q86UV5 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
USP48Q86UV5 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC22.1■■□□□ 1.13
USP48Q86UV5 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
USP48Q86UV5 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
USP48Q86UV5 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
USP48Q86UV5 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC22.1■■□□□ 1.13
USP48Q86UV5 POM121L3P-201ENST00000419331 1163 ntBASIC22.1■■□□□ 1.13
USP48Q86UV5 AC005104.2-201ENST00000427818 678 ntBASIC22.1■■□□□ 1.13
USP48Q86UV5 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
USP48Q86UV5 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC22.1■■□□□ 1.13
USP48Q86UV5 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
USP48Q86UV5 MIR5100-201ENST00000579544 119 ntBASIC22.1■■□□□ 1.13
USP48Q86UV5 TEN1-204ENST00000588202 862 ntTSL 3 BASIC22.1■■□□□ 1.13
USP48Q86UV5 AC024563.2-201ENST00000603282 481 ntBASIC22.1■■□□□ 1.13
USP48Q86UV5 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
USP48Q86UV5 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
USP48Q86UV5 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC22.1■■□□□ 1.13
USP48Q86UV5 AC020763.4-201ENST00000623414 4170 ntBASIC22.1■■□□□ 1.13
USP48Q86UV5 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
USP48Q86UV5 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
USP48Q86UV5 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC22.1■■□□□ 1.13
USP48Q86UV5 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC22.1■■□□□ 1.13
USP48Q86UV5 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC22.1■■□□□ 1.13
USP48Q86UV5 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
USP48Q86UV5 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC22.1■■□□□ 1.13
USP48Q86UV5 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC22.1■■□□□ 1.13
USP48Q86UV5 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
USP48Q86UV5 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
USP48Q86UV5 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
USP48Q86UV5 EFTUD1P1-204ENST00000560401 1798 ntBASIC22.1■■□□□ 1.13
USP48Q86UV5 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
USP48Q86UV5 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
USP48Q86UV5 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC22.09■■□□□ 1.13
USP48Q86UV5 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC22.09■■□□□ 1.13
USP48Q86UV5 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
USP48Q86UV5 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
USP48Q86UV5 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC22.09■■□□□ 1.13
USP48Q86UV5 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
USP48Q86UV5 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
USP48Q86UV5 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
USP48Q86UV5 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
USP48Q86UV5 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
USP48Q86UV5 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
USP48Q86UV5 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
USP48Q86UV5 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC22.09■■□□□ 1.13
USP48Q86UV5 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC22.09■■□□□ 1.13
USP48Q86UV5 ELP6-205ENST00000439305 880 ntTSL 2 BASIC22.09■■□□□ 1.13
USP48Q86UV5 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
USP48Q86UV5 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC22.09■■□□□ 1.13
USP48Q86UV5 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC22.09■■□□□ 1.13
USP48Q86UV5 AC011840.4-201ENST00000578471 627 ntBASIC22.09■■□□□ 1.13
USP48Q86UV5 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC22.09■■□□□ 1.13
USP48Q86UV5 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC22.09■■□□□ 1.13
USP48Q86UV5 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC22.09■■□□□ 1.13
USP48Q86UV5 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
USP48Q86UV5 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
USP48Q86UV5 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
USP48Q86UV5 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC22.09■■□□□ 1.13
USP48Q86UV5 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
USP48Q86UV5 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
USP48Q86UV5 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC22.09■■□□□ 1.13
USP48Q86UV5 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC22.09■■□□□ 1.13
USP48Q86UV5 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
USP48Q86UV5 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
USP48Q86UV5 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
USP48Q86UV5 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
USP48Q86UV5 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC22.08■■□□□ 1.13
USP48Q86UV5 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC22.08■■□□□ 1.13
USP48Q86UV5 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
USP48Q86UV5 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms