Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00643Q86TS7 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00643Q86TS7 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00643Q86TS7 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC11.27□□□□□ -0.6
LINC00643Q86TS7 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC11.27□□□□□ -0.6
LINC00643Q86TS7 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00643Q86TS7 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00643Q86TS7 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00643Q86TS7 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00643Q86TS7 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00643Q86TS7 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00643Q86TS7 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00643Q86TS7 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
LINC00643Q86TS7 AC097376.2-205ENST00000610159 5334 ntBASIC11.27□□□□□ -0.6
LINC00643Q86TS7 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC11.27□□□□□ -0.6
LINC00643Q86TS7 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 TPT1-202ENST00000379055 948 ntTSL 2 BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 PTPA-214ENST00000423100 988 ntTSL 2 BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 pRNA.6-201ENST00000610482 90 ntBASIC11.27□□□□□ -0.61
LINC00643Q86TS7 pRNA.5-201ENST00000612139 90 ntBASIC11.27□□□□□ -0.61
LINC00643Q86TS7 pRNA.11-201ENST00000618423 90 ntBASIC11.27□□□□□ -0.61
LINC00643Q86TS7 pRNA.13-201ENST00000619112 90 ntBASIC11.27□□□□□ -0.61
LINC00643Q86TS7 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 R3HDM2P2-201ENST00000401880 2116 ntBASIC11.27□□□□□ -0.61
LINC00643Q86TS7 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
LINC00643Q86TS7 AC009237.3-201ENST00000393279 1427 ntBASIC11.26□□□□□ -0.61
LINC00643Q86TS7 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 HYI-210ENST00000486909 905 ntTSL 5 BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 AC006058.4-201ENST00000624016 1670 ntBASIC11.26□□□□□ -0.61
LINC00643Q86TS7 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
LINC00643Q86TS7 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 AC138969.2-201ENST00000532739 9932 ntBASIC11.25□□□□□ -0.61
LINC00643Q86TS7 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC11.25□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms