Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
CLRN1P58418 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLRN1P58418 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CLRN1P58418 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.17■□□□□ 0.18
CLRN1P58418 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.17■□□□□ 0.18
CLRN1P58418 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CLRN1P58418 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.17■□□□□ 0.18
CLRN1P58418 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CLRN1P58418 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN1P58418 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN1P58418 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN1P58418 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CLRN1P58418 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN1P58418 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN1P58418 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN1P58418 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.16■□□□□ 0.18
CLRN1P58418 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN1P58418 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CLRN1P58418 AC093010.1-201ENST00000473625 1624 ntBASIC16.16■□□□□ 0.18
CLRN1P58418 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.16■□□□□ 0.18
CLRN1P58418 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CLRN1P58418 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CLRN1P58418 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN1P58418 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CLRN1P58418 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN1P58418 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN1P58418 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.16■□□□□ 0.18
CLRN1P58418 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN1P58418 KRT18P57-201ENST00000443599 1254 ntBASIC16.16■□□□□ 0.18
CLRN1P58418 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
CLRN1P58418 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.16■□□□□ 0.18
CLRN1P58418 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC16.16■□□□□ 0.18
CLRN1P58418 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.16■□□□□ 0.18
CLRN1P58418 AC139887.4-201ENST00000607877 719 ntBASIC16.16■□□□□ 0.18
CLRN1P58418 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN1P58418 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.16■□□□□ 0.18
CLRN1P58418 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.16■□□□□ 0.18
CLRN1P58418 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN1P58418 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.16■□□□□ 0.18
CLRN1P58418 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN1P58418 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.16■□□□□ 0.18
CLRN1P58418 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
CLRN1P58418 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.16■□□□□ 0.18
CLRN1P58418 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN1P58418 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLRN1P58418 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.16■□□□□ 0.18
CLRN1P58418 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
CLRN1P58418 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN1P58418 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN1P58418 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN1P58418 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CLRN1P58418 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN1P58418 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN1P58418 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN1P58418 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.15■□□□□ 0.18
CLRN1P58418 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.15■□□□□ 0.18
CLRN1P58418 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN1P58418 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.15■□□□□ 0.18
CLRN1P58418 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
CLRN1P58418 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
CLRN1P58418 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CLRN1P58418 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN1P58418 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN1P58418 RASA4DP-201ENST00000460726 1199 ntBASIC16.15■□□□□ 0.18
CLRN1P58418 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CLRN1P58418 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC16.15■□□□□ 0.18
CLRN1P58418 AL441883.1-201ENST00000566170 1045 ntBASIC16.15■□□□□ 0.18
CLRN1P58418 P4HB-223ENST00000576390 439 ntTSL 4 BASIC16.15■□□□□ 0.18
CLRN1P58418 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC16.15■□□□□ 0.18
CLRN1P58418 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
CLRN1P58418 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN1P58418 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.15■□□□□ 0.18
CLRN1P58418 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.15■□□□□ 0.18
CLRN1P58418 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN1P58418 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN1P58418 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN1P58418 NOC2LP2-201ENST00000407594 1944 ntBASIC16.15■□□□□ 0.18
CLRN1P58418 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.15■□□□□ 0.18
CLRN1P58418 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN1P58418 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC16.15■□□□□ 0.18
CLRN1P58418 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN1P58418 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN1P58418 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.15■□□□□ 0.18
CLRN1P58418 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CLRN1P58418 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN1P58418 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLRN1P58418 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.18
CLRN1P58418 OR6D1P-203ENST00000641209 4860 ntBASIC16.14■□□□□ 0.18
CLRN1P58418 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.14■□□□□ 0.17
CLRN1P58418 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.14■□□□□ 0.17
CLRN1P58418 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
CLRN1P58418 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN1P58418 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN1P58418 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN1P58418 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN1P58418 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN1P58418 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN1P58418 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms