Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.5■□□□□ 0.39
FOXA1P55317 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.5■□□□□ 0.39
FOXA1P55317 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.5■□□□□ 0.39
FOXA1P55317 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
FOXA1P55317 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
FOXA1P55317 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
FOXA1P55317 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXA1P55317 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
FOXA1P55317 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.49■□□□□ 0.39
FOXA1P55317 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
FOXA1P55317 PCDHA12-202ENST00000613593 2588 ntBASIC17.49■□□□□ 0.39
FOXA1P55317 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
FOXA1P55317 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
FOXA1P55317 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.49■□□□□ 0.39
FOXA1P55317 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
FOXA1P55317 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.49■□□□□ 0.39
FOXA1P55317 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.49■□□□□ 0.39
FOXA1P55317 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.49■□□□□ 0.39
FOXA1P55317 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
FOXA1P55317 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.49■□□□□ 0.39
FOXA1P55317 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.49■□□□□ 0.39
FOXA1P55317 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.49■□□□□ 0.39
FOXA1P55317 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.49■□□□□ 0.39
FOXA1P55317 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.49■□□□□ 0.39
FOXA1P55317 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.49■□□□□ 0.39
FOXA1P55317 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.49■□□□□ 0.39
FOXA1P55317 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXA1P55317 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.49■□□□□ 0.39
FOXA1P55317 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
FOXA1P55317 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.48■□□□□ 0.39
FOXA1P55317 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.48■□□□□ 0.39
FOXA1P55317 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
FOXA1P55317 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA1P55317 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
FOXA1P55317 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.48■□□□□ 0.39
FOXA1P55317 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
FOXA1P55317 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA1P55317 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA1P55317 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
FOXA1P55317 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
FOXA1P55317 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.48■□□□□ 0.39
FOXA1P55317 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA1P55317 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA1P55317 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.48■□□□□ 0.39
FOXA1P55317 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA1P55317 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.48■□□□□ 0.39
FOXA1P55317 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA1P55317 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
FOXA1P55317 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.48■□□□□ 0.39
FOXA1P55317 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.48■□□□□ 0.39
FOXA1P55317 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.48■□□□□ 0.39
FOXA1P55317 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.48■□□□□ 0.39
FOXA1P55317 AC128688.1-201ENST00000487626 519 ntBASIC17.48■□□□□ 0.39
FOXA1P55317 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA1P55317 AP006294.2-201ENST00000641667 209 ntBASIC17.48■□□□□ 0.39
FOXA1P55317 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA1P55317 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA1P55317 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA1P55317 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.48■□□□□ 0.39
FOXA1P55317 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.48■□□□□ 0.39
FOXA1P55317 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA1P55317 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA1P55317 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.48■□□□□ 0.39
FOXA1P55317 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA1P55317 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA1P55317 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.48■□□□□ 0.39
FOXA1P55317 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
FOXA1P55317 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
FOXA1P55317 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
FOXA1P55317 LINC00167-201ENST00000530583 1419 ntBASIC17.47■□□□□ 0.39
FOXA1P55317 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.47■□□□□ 0.39
FOXA1P55317 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms