Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.81■□□□□ 0.6
CDH6P55285 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH6P55285 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH6P55285 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.81■□□□□ 0.6
CDH6P55285 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.81■□□□□ 0.6
CDH6P55285 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
CDH6P55285 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.81■□□□□ 0.6
CDH6P55285 AC079602.3-201ENST00000623931 403 ntBASIC18.81■□□□□ 0.6
CDH6P55285 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH6P55285 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH6P55285 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDH6P55285 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDH6P55285 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH6P55285 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDH6P55285 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH6P55285 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CDH6P55285 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH6P55285 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH6P55285 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH6P55285 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
CDH6P55285 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH6P55285 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDH6P55285 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH6P55285 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDH6P55285 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH6P55285 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH6P55285 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH6P55285 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.8■□□□□ 0.6
CDH6P55285 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH6P55285 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
CDH6P55285 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH6P55285 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH6P55285 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDH6P55285 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CDH6P55285 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
CDH6P55285 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.8■□□□□ 0.6
CDH6P55285 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.8■□□□□ 0.6
CDH6P55285 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH6P55285 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH6P55285 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDH6P55285 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH6P55285 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH6P55285 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH6P55285 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.8■□□□□ 0.6
CDH6P55285 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CDH6P55285 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH6P55285 AL391807.1-203ENST00000604392 2365 ntBASIC18.79■□□□□ 0.6
CDH6P55285 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH6P55285 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDH6P55285 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH6P55285 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH6P55285 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH6P55285 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH6P55285 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDH6P55285 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH6P55285 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.79■□□□□ 0.6
CDH6P55285 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.79■□□□□ 0.6
CDH6P55285 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH6P55285 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDH6P55285 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH6P55285 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH6P55285 AL136038.4-201ENST00000603606 1261 ntBASIC18.79■□□□□ 0.6
CDH6P55285 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH6P55285 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH6P55285 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CDH6P55285 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.79■□□□□ 0.6
CDH6P55285 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.79■□□□□ 0.6
CDH6P55285 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH6P55285 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH6P55285 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CDH6P55285 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH6P55285 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.79■□□□□ 0.6
CDH6P55285 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH6P55285 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDH6P55285 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH6P55285 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH6P55285 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH6P55285 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CDH6P55285 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH6P55285 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH6P55285 GNAS-203ENST00000306120 1878 ntBASIC18.78■□□□□ 0.6
CDH6P55285 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH6P55285 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH6P55285 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CDH6P55285 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.78■□□□□ 0.6
CDH6P55285 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH6P55285 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH6P55285 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH6P55285 STARP1-201ENST00000397973 869 ntBASIC18.78■□□□□ 0.6
CDH6P55285 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CDH6P55285 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.78■□□□□ 0.6
CDH6P55285 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH6P55285 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH6P55285 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH6P55285 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.78■□□□□ 0.6
CDH6P55285 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.78■□□□□ 0.6
CDH6P55285 AC024563.2-201ENST00000603282 481 ntBASIC18.78■□□□□ 0.6
CDH6P55285 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH6P55285 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CDH6P55285 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms