Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC15.93■□□□□ 0.14
SOX2P48431 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC15.93■□□□□ 0.14
SOX2P48431 SLC25A1P4-201ENST00000567977 778 ntBASIC15.93■□□□□ 0.14
SOX2P48431 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC15.93■□□□□ 0.14
SOX2P48431 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC15.93■□□□□ 0.14
SOX2P48431 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC15.93■□□□□ 0.14
SOX2P48431 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC15.93■□□□□ 0.14
SOX2P48431 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX2P48431 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX2P48431 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC15.93■□□□□ 0.14
SOX2P48431 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX2P48431 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC15.93■□□□□ 0.14
SOX2P48431 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX2P48431 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX2P48431 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SOX2P48431 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
SOX2P48431 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
SOX2P48431 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC15.93■□□□□ 0.14
SOX2P48431 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC15.92■□□□□ 0.14
SOX2P48431 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC15.92■□□□□ 0.14
SOX2P48431 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
SOX2P48431 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC15.92■□□□□ 0.14
SOX2P48431 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC15.92■□□□□ 0.14
SOX2P48431 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 FAM197Y1-201ENST00000421178 764 ntBASIC15.92■□□□□ 0.14
SOX2P48431 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC15.92■□□□□ 0.14
SOX2P48431 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC15.92■□□□□ 0.14
SOX2P48431 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC15.92■□□□□ 0.14
SOX2P48431 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC15.92■□□□□ 0.14
SOX2P48431 AL163051.1-201ENST00000569214 1512 ntBASIC15.92■□□□□ 0.14
SOX2P48431 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.92■□□□□ 0.14
SOX2P48431 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
SOX2P48431 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC15.92■□□□□ 0.14
SOX2P48431 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
SOX2P48431 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SOX2P48431 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
SOX2P48431 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
SOX2P48431 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC15.91■□□□□ 0.14
SOX2P48431 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 ID1-201ENST00000376105 1233 ntBASIC15.91■□□□□ 0.14
SOX2P48431 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 MFAP1P1-201ENST00000442257 1255 ntBASIC15.91■□□□□ 0.14
SOX2P48431 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
SOX2P48431 RPPH1-201ENST00000516869 333 ntBASIC15.91■□□□□ 0.14
SOX2P48431 RARRES2P10-201ENST00000564312 460 ntBASIC15.91■□□□□ 0.14
SOX2P48431 MIR3180-5-201ENST00000583743 153 ntBASIC15.91■□□□□ 0.14
SOX2P48431 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC15.91■□□□□ 0.14
SOX2P48431 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC15.91■□□□□ 0.14
SOX2P48431 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
SOX2P48431 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC15.91■□□□□ 0.14
SOX2P48431 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.91■□□□□ 0.14
SOX2P48431 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SOX2P48431 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
SOX2P48431 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
SOX2P48431 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
SOX2P48431 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
SOX2P48431 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SOX2P48431 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms