Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC23.69■■□□□ 1.38
COL18A1P39060 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC23.69■■□□□ 1.38
COL18A1P39060 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC23.69■■□□□ 1.38
COL18A1P39060 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC23.69■■□□□ 1.38
COL18A1P39060 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
COL18A1P39060 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC23.68■■□□□ 1.38
COL18A1P39060 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL18A1P39060 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC23.68■■□□□ 1.38
COL18A1P39060 AC103564.2-201ENST00000432853 1299 ntBASIC23.68■■□□□ 1.38
COL18A1P39060 POLD4-207ENST00000531239 584 ntTSL 2 BASIC23.68■■□□□ 1.38
COL18A1P39060 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC23.68■■□□□ 1.38
COL18A1P39060 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL18A1P39060 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL18A1P39060 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL18A1P39060 SIRPAP1-201ENST00000448467 1770 ntBASIC23.68■■□□□ 1.38
COL18A1P39060 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL18A1P39060 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
COL18A1P39060 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC23.68■■□□□ 1.38
COL18A1P39060 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
COL18A1P39060 PON3-205ENST00000451904 1053 ntTSL 3 BASIC23.68■■□□□ 1.38
COL18A1P39060 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC23.68■■□□□ 1.38
COL18A1P39060 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
COL18A1P39060 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC23.68■■□□□ 1.38
COL18A1P39060 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC23.68■■□□□ 1.38
COL18A1P39060 GPR89P-201ENST00000407924 1495 ntBASIC23.68■■□□□ 1.38
COL18A1P39060 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC23.67■■□□□ 1.38
COL18A1P39060 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC23.67■■□□□ 1.38
COL18A1P39060 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL18A1P39060 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC23.67■■□□□ 1.38
COL18A1P39060 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
COL18A1P39060 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
COL18A1P39060 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL18A1P39060 SLC4A1APP2-201ENST00000424054 1259 ntBASIC23.67■■□□□ 1.38
COL18A1P39060 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
COL18A1P39060 RPS15P9-201ENST00000494093 319 ntBASIC23.67■■□□□ 1.38
COL18A1P39060 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC23.67■■□□□ 1.38
COL18A1P39060 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC23.67■■□□□ 1.38
COL18A1P39060 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL18A1P39060 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
COL18A1P39060 MIR4751-201ENST00000578027 74 ntBASIC23.67■■□□□ 1.38
COL18A1P39060 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
COL18A1P39060 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL18A1P39060 KRT18P28-201ENST00000453838 1332 ntBASIC23.67■■□□□ 1.38
COL18A1P39060 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL18A1P39060 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
COL18A1P39060 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC23.67■■□□□ 1.38
COL18A1P39060 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL18A1P39060 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL18A1P39060 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL18A1P39060 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC23.66■■□□□ 1.38
COL18A1P39060 FUT8-AS1-201ENST00000621019 1521 ntBASIC23.66■■□□□ 1.38
COL18A1P39060 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC23.66■■□□□ 1.38
COL18A1P39060 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL18A1P39060 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL18A1P39060 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL18A1P39060 IGHV3-65-201ENST00000523210 341 ntBASIC23.66■■□□□ 1.38
COL18A1P39060 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
COL18A1P39060 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC23.66■■□□□ 1.38
COL18A1P39060 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
COL18A1P39060 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC23.66■■□□□ 1.38
COL18A1P39060 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC23.66■■□□□ 1.38
COL18A1P39060 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL18A1P39060 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
COL18A1P39060 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC23.66■■□□□ 1.38
COL18A1P39060 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
COL18A1P39060 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
COL18A1P39060 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL18A1P39060 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL18A1P39060 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL18A1P39060 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL18A1P39060 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL18A1P39060 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC23.65■■□□□ 1.38
COL18A1P39060 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC23.65■■□□□ 1.38
COL18A1P39060 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL18A1P39060 AL020989.1-201ENST00000422979 469 ntBASIC23.65■■□□□ 1.38
COL18A1P39060 RPL28-205ENST00000558131 444 ntTSL 5 BASIC23.65■■□□□ 1.38
COL18A1P39060 PDPK2P-202ENST00000562415 1191 ntBASIC23.65■■□□□ 1.38
COL18A1P39060 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC23.65■■□□□ 1.38
COL18A1P39060 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC23.65■■□□□ 1.38
COL18A1P39060 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
COL18A1P39060 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL18A1P39060 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
COL18A1P39060 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL18A1P39060 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL18A1P39060 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL18A1P39060 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL18A1P39060 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL18A1P39060 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL18A1P39060 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
COL18A1P39060 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
COL18A1P39060 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
COL18A1P39060 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL18A1P39060 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL18A1P39060 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
COL18A1P39060 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL18A1P39060 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
COL18A1P39060 PON3-203ENST00000427422 894 ntTSL 3 BASIC23.65■■□□□ 1.38
COL18A1P39060 CNN2P11-201ENST00000429351 262 ntBASIC23.65■■□□□ 1.38
COL18A1P39060 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC23.65■■□□□ 1.38
COL18A1P39060 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC23.65■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms