Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
HOXC9P31274 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
HOXC9P31274 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
HOXC9P31274 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
HOXC9P31274 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
HOXC9P31274 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
HOXC9P31274 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
HOXC9P31274 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC23.82■■□□□ 1.4
HOXC9P31274 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
HOXC9P31274 IMP4-203ENST00000409935 958 ntTSL 5 BASIC23.82■■□□□ 1.4
HOXC9P31274 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC23.82■■□□□ 1.4
HOXC9P31274 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC23.82■■□□□ 1.4
HOXC9P31274 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC23.82■■□□□ 1.4
HOXC9P31274 SLC25A24-204ENST00000569674 2357 ntBASIC23.82■■□□□ 1.4
HOXC9P31274 SIGLEC16-201ENST00000599858 1437 ntBASIC23.82■■□□□ 1.4
HOXC9P31274 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
HOXC9P31274 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC23.82■■□□□ 1.4
HOXC9P31274 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
HOXC9P31274 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
HOXC9P31274 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
HOXC9P31274 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC23.81■■□□□ 1.4
HOXC9P31274 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
HOXC9P31274 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
HOXC9P31274 SPDYE21P-201ENST00000413323 827 ntBASIC23.81■■□□□ 1.4
HOXC9P31274 KRT18P3-201ENST00000451602 1288 ntBASIC23.81■■□□□ 1.4
HOXC9P31274 AC092183.1-201ENST00000469884 875 ntBASIC23.81■■□□□ 1.4
HOXC9P31274 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC23.81■■□□□ 1.4
HOXC9P31274 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC23.81■■□□□ 1.4
HOXC9P31274 AC055717.3-201ENST00000622967 595 ntBASIC23.81■■□□□ 1.4
HOXC9P31274 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
HOXC9P31274 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC23.81■■□□□ 1.4
HOXC9P31274 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC23.81■■□□□ 1.4
HOXC9P31274 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC23.81■■□□□ 1.4
HOXC9P31274 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
HOXC9P31274 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
HOXC9P31274 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
HOXC9P31274 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
HOXC9P31274 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
HOXC9P31274 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC23.8■■□□□ 1.4
HOXC9P31274 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC23.8■■□□□ 1.4
HOXC9P31274 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
HOXC9P31274 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC23.8■■□□□ 1.4
HOXC9P31274 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC23.8■■□□□ 1.4
HOXC9P31274 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 AC073621.1-201ENST00000392730 636 ntBASIC23.8■■□□□ 1.4
HOXC9P31274 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC23.8■■□□□ 1.4
HOXC9P31274 AC005104.2-201ENST00000427818 678 ntBASIC23.8■■□□□ 1.4
HOXC9P31274 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 AC009947.1-201ENST00000444350 727 ntBASIC23.8■■□□□ 1.4
HOXC9P31274 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC23.8■■□□□ 1.4
HOXC9P31274 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC23.8■■□□□ 1.4
HOXC9P31274 SDCCAG3P1-201ENST00000589292 1150 ntBASIC23.8■■□□□ 1.4
HOXC9P31274 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC23.8■■□□□ 1.4
HOXC9P31274 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC23.8■■□□□ 1.4
HOXC9P31274 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC23.8■■□□□ 1.4
HOXC9P31274 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC23.8■■□□□ 1.4
HOXC9P31274 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
HOXC9P31274 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC23.79■■□□□ 1.4
HOXC9P31274 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
HOXC9P31274 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HOXC9P31274 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HOXC9P31274 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HOXC9P31274 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC23.79■■□□□ 1.4
HOXC9P31274 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC23.79■■□□□ 1.4
HOXC9P31274 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
HOXC9P31274 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC23.79■■□□□ 1.4
HOXC9P31274 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC23.79■■□□□ 1.4
HOXC9P31274 PON3-205ENST00000451904 1053 ntTSL 3 BASIC23.79■■□□□ 1.4
HOXC9P31274 PRYP5-201ENST00000451909 266 ntBASIC23.79■■□□□ 1.4
HOXC9P31274 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC23.79■■□□□ 1.4
HOXC9P31274 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC23.79■■□□□ 1.4
HOXC9P31274 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC23.79■■□□□ 1.4
HOXC9P31274 AL139424.1-201ENST00000607572 797 ntBASIC23.79■■□□□ 1.4
HOXC9P31274 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HOXC9P31274 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HOXC9P31274 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
HOXC9P31274 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
HOXC9P31274 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
HOXC9P31274 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
HOXC9P31274 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
HOXC9P31274 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
HOXC9P31274 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC23.78■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms