Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL11A1P12107 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.41■□□□□ 0.86
COL11A1P12107 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL11A1P12107 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.41■□□□□ 0.86
COL11A1P12107 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL11A1P12107 FAM220CP-201ENST00000395253 831 ntBASIC20.41■□□□□ 0.86
COL11A1P12107 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC20.41■□□□□ 0.86
COL11A1P12107 CENPM-204ENST00000402420 688 ntTSL 5 BASIC20.41■□□□□ 0.86
COL11A1P12107 AL591424.1-201ENST00000442569 1213 ntBASIC20.41■□□□□ 0.86
COL11A1P12107 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL11A1P12107 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC20.41■□□□□ 0.86
COL11A1P12107 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL11A1P12107 AL353593.2-201ENST00000602529 1483 ntBASIC20.41■□□□□ 0.86
COL11A1P12107 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.41■□□□□ 0.86
COL11A1P12107 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL11A1P12107 AC097374.2-201ENST00000618617 1306 ntBASIC20.4■□□□□ 0.86
COL11A1P12107 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.4■□□□□ 0.86
COL11A1P12107 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
COL11A1P12107 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.4■□□□□ 0.86
COL11A1P12107 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.4■□□□□ 0.86
COL11A1P12107 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL11A1P12107 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL11A1P12107 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL11A1P12107 YBX2P1-201ENST00000394192 760 ntBASIC20.4■□□□□ 0.86
COL11A1P12107 MIR1233-2-201ENST00000408138 82 ntBASIC20.4■□□□□ 0.86
COL11A1P12107 MIR1233-1-201ENST00000408722 82 ntBASIC20.4■□□□□ 0.86
COL11A1P12107 MSRA-206ENST00000521209 814 ntTSL 3 BASIC20.4■□□□□ 0.86
COL11A1P12107 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC20.4■□□□□ 0.86
COL11A1P12107 AC027601.4-201ENST00000611259 610 ntBASIC20.4■□□□□ 0.86
COL11A1P12107 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
COL11A1P12107 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL11A1P12107 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.4■□□□□ 0.86
COL11A1P12107 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL11A1P12107 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL11A1P12107 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL11A1P12107 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.4■□□□□ 0.86
COL11A1P12107 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL11A1P12107 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.4■□□□□ 0.86
COL11A1P12107 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL11A1P12107 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC20.4■□□□□ 0.86
COL11A1P12107 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL11A1P12107 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL11A1P12107 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC20.4■□□□□ 0.86
COL11A1P12107 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC20.4■□□□□ 0.86
COL11A1P12107 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL11A1P12107 AC093503.3-201ENST00000624917 2352 ntBASIC20.4■□□□□ 0.86
COL11A1P12107 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL11A1P12107 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL11A1P12107 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL11A1P12107 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
COL11A1P12107 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
COL11A1P12107 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.39■□□□□ 0.86
COL11A1P12107 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC20.39■□□□□ 0.86
COL11A1P12107 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC20.39■□□□□ 0.86
COL11A1P12107 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC20.39■□□□□ 0.86
COL11A1P12107 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC20.39■□□□□ 0.86
COL11A1P12107 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL11A1P12107 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
COL11A1P12107 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL11A1P12107 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL11A1P12107 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL11A1P12107 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL11A1P12107 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL11A1P12107 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
COL11A1P12107 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.39■□□□□ 0.85
COL11A1P12107 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL11A1P12107 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
COL11A1P12107 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.39■□□□□ 0.85
COL11A1P12107 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL11A1P12107 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.39■□□□□ 0.85
COL11A1P12107 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL11A1P12107 ELK2BP-201ENST00000415014 1224 ntBASIC20.39■□□□□ 0.85
COL11A1P12107 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC20.39■□□□□ 0.85
COL11A1P12107 UNC93B6-202ENST00000528242 690 ntBASIC20.39■□□□□ 0.85
COL11A1P12107 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC20.39■□□□□ 0.85
COL11A1P12107 AC073592.4-201ENST00000623827 446 ntBASIC20.39■□□□□ 0.85
COL11A1P12107 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL11A1P12107 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL11A1P12107 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL11A1P12107 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.38■□□□□ 0.85
COL11A1P12107 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL11A1P12107 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL11A1P12107 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL11A1P12107 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL11A1P12107 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL11A1P12107 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL11A1P12107 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL11A1P12107 AC093677.2-201ENST00000600169 1863 ntBASIC20.38■□□□□ 0.85
COL11A1P12107 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL11A1P12107 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.38■□□□□ 0.85
COL11A1P12107 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC20.38■□□□□ 0.85
COL11A1P12107 SOD2-201ENST00000337404 991 ntTSL 2 BASIC20.38■□□□□ 0.85
COL11A1P12107 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC20.38■□□□□ 0.85
COL11A1P12107 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC20.38■□□□□ 0.85
COL11A1P12107 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
COL11A1P12107 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC20.38■□□□□ 0.85
COL11A1P12107 SRP19-202ENST00000445150 833 ntTSL 2 BASIC20.38■□□□□ 0.85
COL11A1P12107 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC20.38■□□□□ 0.85
COL11A1P12107 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC20.38■□□□□ 0.85
COL11A1P12107 CIPC-205ENST00000555437 566 ntTSL 3 BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms