Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL4A1P02462 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.97■■□□□ 1.11
COL4A1P02462 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL4A1P02462 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
COL4A1P02462 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC21.97■■□□□ 1.11
COL4A1P02462 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL4A1P02462 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL4A1P02462 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL4A1P02462 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL4A1P02462 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC21.97■■□□□ 1.11
COL4A1P02462 AC092183.1-201ENST00000469884 875 ntBASIC21.97■■□□□ 1.11
COL4A1P02462 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC21.97■■□□□ 1.11
COL4A1P02462 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC21.97■■□□□ 1.11
COL4A1P02462 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL4A1P02462 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL4A1P02462 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC21.96■■□□□ 1.11
COL4A1P02462 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A1P02462 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A1P02462 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC21.96■■□□□ 1.11
COL4A1P02462 RPSAP43-201ENST00000402237 625 ntBASIC21.96■■□□□ 1.11
COL4A1P02462 SPDYE21P-201ENST00000413323 827 ntBASIC21.96■■□□□ 1.11
COL4A1P02462 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A1P02462 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC21.96■■□□□ 1.11
COL4A1P02462 AC105339.3-201ENST00000560043 636 ntBASIC21.96■■□□□ 1.11
COL4A1P02462 AL139424.1-201ENST00000607572 797 ntBASIC21.96■■□□□ 1.11
COL4A1P02462 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A1P02462 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A1P02462 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC21.96■■□□□ 1.11
COL4A1P02462 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A1P02462 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
COL4A1P02462 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC21.96■■□□□ 1.11
COL4A1P02462 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A1P02462 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A1P02462 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL4A1P02462 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
COL4A1P02462 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC21.95■■□□□ 1.11
COL4A1P02462 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
COL4A1P02462 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC21.95■■□□□ 1.11
COL4A1P02462 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC21.95■■□□□ 1.1
COL4A1P02462 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A1P02462 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A1P02462 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A1P02462 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A1P02462 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC21.95■■□□□ 1.1
COL4A1P02462 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC21.95■■□□□ 1.1
COL4A1P02462 GPX1P2-201ENST00000429271 606 ntBASIC21.95■■□□□ 1.1
COL4A1P02462 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC21.95■■□□□ 1.1
COL4A1P02462 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC21.95■■□□□ 1.1
COL4A1P02462 AC019129.2-201ENST00000609837 1235 ntBASIC21.95■■□□□ 1.1
COL4A1P02462 AC027601.4-201ENST00000611259 610 ntBASIC21.95■■□□□ 1.1
COL4A1P02462 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC21.95■■□□□ 1.1
COL4A1P02462 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A1P02462 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A1P02462 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.95■■□□□ 1.1
COL4A1P02462 AL096828.2-201ENST00000567259 1965 ntBASIC21.95■■□□□ 1.1
COL4A1P02462 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A1P02462 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
COL4A1P02462 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A1P02462 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC21.95■■□□□ 1.1
COL4A1P02462 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A1P02462 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
COL4A1P02462 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A1P02462 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A1P02462 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A1P02462 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A1P02462 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
COL4A1P02462 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A1P02462 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A1P02462 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
COL4A1P02462 HS6ST1P1-201ENST00000481504 1234 ntBASIC21.95■■□□□ 1.1
COL4A1P02462 AC122714.2-201ENST00000502787 707 ntBASIC21.95■■□□□ 1.1
COL4A1P02462 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
COL4A1P02462 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC21.95■■□□□ 1.1
COL4A1P02462 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC21.95■■□□□ 1.1
COL4A1P02462 AC097374.2-201ENST00000618617 1306 ntBASIC21.94■■□□□ 1.1
COL4A1P02462 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC21.94■■□□□ 1.1
COL4A1P02462 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.94■■□□□ 1.1
COL4A1P02462 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL4A1P02462 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL4A1P02462 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL4A1P02462 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.94■■□□□ 1.1
COL4A1P02462 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC21.94■■□□□ 1.1
COL4A1P02462 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL4A1P02462 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL4A1P02462 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC21.94■■□□□ 1.1
COL4A1P02462 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC21.94■■□□□ 1.1
COL4A1P02462 FIS1-203ENST00000442303 631 ntTSL 3 BASIC21.94■■□□□ 1.1
COL4A1P02462 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC21.94■■□□□ 1.1
COL4A1P02462 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC21.94■■□□□ 1.1
COL4A1P02462 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL4A1P02462 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC21.94■■□□□ 1.1
COL4A1P02462 AL353593.2-201ENST00000602529 1483 ntBASIC21.94■■□□□ 1.1
COL4A1P02462 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL4A1P02462 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL4A1P02462 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL4A1P02462 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
COL4A1P02462 AC132938.5-201ENST00000624980 1813 ntBASIC21.94■■□□□ 1.1
COL4A1P02462 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL4A1P02462 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL4A1P02462 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms