Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGN4O00479 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGN4O00479 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGN4O00479 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGN4O00479 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
HMGN4O00479 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.81■□□□□ 0.28
HMGN4O00479 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGN4O00479 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGN4O00479 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGN4O00479 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGN4O00479 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.81■□□□□ 0.28
HMGN4O00479 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGN4O00479 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
HMGN4O00479 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGN4O00479 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.81■□□□□ 0.28
HMGN4O00479 CD81-212ENST00000526072 1172 ntTSL 5 BASIC16.81■□□□□ 0.28
HMGN4O00479 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
HMGN4O00479 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
HMGN4O00479 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGN4O00479 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC16.81■□□□□ 0.28
HMGN4O00479 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGN4O00479 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGN4O00479 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGN4O00479 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGN4O00479 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HMGN4O00479 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGN4O00479 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
HMGN4O00479 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGN4O00479 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGN4O00479 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGN4O00479 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.81■□□□□ 0.28
HMGN4O00479 LINC00602-201ENST00000629776 2065 ntBASIC16.81■□□□□ 0.28
HMGN4O00479 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HMGN4O00479 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGN4O00479 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGN4O00479 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGN4O00479 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGN4O00479 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
HMGN4O00479 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGN4O00479 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGN4O00479 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
HMGN4O00479 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGN4O00479 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
HMGN4O00479 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGN4O00479 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGN4O00479 SLC25A3P1-201ENST00000443844 931 ntBASIC16.8■□□□□ 0.28
HMGN4O00479 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
HMGN4O00479 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.8■□□□□ 0.28
HMGN4O00479 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGN4O00479 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGN4O00479 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGN4O00479 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
HMGN4O00479 FZD10-202ENST00000539839 3282 ntBASIC16.8■□□□□ 0.28
HMGN4O00479 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGN4O00479 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGN4O00479 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGN4O00479 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGN4O00479 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
HMGN4O00479 AC138932.1-201ENST00000534164 6830 ntBASIC16.8■□□□□ 0.28
HMGN4O00479 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGN4O00479 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
HMGN4O00479 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HMGN4O00479 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGN4O00479 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGN4O00479 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGN4O00479 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HMGN4O00479 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
HMGN4O00479 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGN4O00479 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGN4O00479 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGN4O00479 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGN4O00479 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGN4O00479 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.79■□□□□ 0.28
HMGN4O00479 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
HMGN4O00479 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGN4O00479 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGN4O00479 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGN4O00479 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
HMGN4O00479 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGN4O00479 AC034232.1-201ENST00000506026 1064 ntBASIC16.79■□□□□ 0.28
HMGN4O00479 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC16.79■□□□□ 0.28
HMGN4O00479 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGN4O00479 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGN4O00479 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGN4O00479 AL023973.1-201ENST00000624619 620 ntBASIC16.79■□□□□ 0.28
HMGN4O00479 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGN4O00479 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGN4O00479 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGN4O00479 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGN4O00479 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HMGN4O00479 HCG11-201ENST00000411553 5696 ntBASIC16.79■□□□□ 0.28
HMGN4O00479 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGN4O00479 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HMGN4O00479 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.79■□□□□ 0.28
HMGN4O00479 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGN4O00479 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGN4O00479 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGN4O00479 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
HMGN4O00479 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HMGN4O00479 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms