Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
FOXA2Q9Y261 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 ILF2-202ENST00000368681 726 ntTSL 2 BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 KRT18P23-201ENST00000435622 1283 ntBASIC14.64□□□□□ -0.07
FOXA2Q9Y261 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 PPOX-219ENST00000544598 813 ntTSL 2 BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 KRT18P55-202ENST00000578578 1546 ntBASIC14.64□□□□□ -0.07
FOXA2Q9Y261 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
FOXA2Q9Y261 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 TERF1P1-201ENST00000311003 1181 ntBASIC14.63□□□□□ -0.07
FOXA2Q9Y261 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
FOXA2Q9Y261 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms