Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.83■□□□□ 0.6
LIMD1Q9UGP4 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMD1Q9UGP4 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIMD1Q9UGP4 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIMD1Q9UGP4 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.83■□□□□ 0.6
LIMD1Q9UGP4 RNA5SP415-201ENST00000517246 115 ntBASIC18.83■□□□□ 0.6
LIMD1Q9UGP4 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.83■□□□□ 0.6
LIMD1Q9UGP4 AC012640.2-201ENST00000561606 901 ntBASIC18.83■□□□□ 0.6
LIMD1Q9UGP4 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.83■□□□□ 0.6
LIMD1Q9UGP4 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.83■□□□□ 0.6
LIMD1Q9UGP4 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
LIMD1Q9UGP4 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LIMD1Q9UGP4 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.83■□□□□ 0.6
LIMD1Q9UGP4 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMD1Q9UGP4 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
LIMD1Q9UGP4 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LIMD1Q9UGP4 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
LIMD1Q9UGP4 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 YBX2P1-201ENST00000394192 760 ntBASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 OR7E14P-202ENST00000530490 1290 ntBASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 Z83851.2-201ENST00000609564 659 ntBASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 AC083906.6-201ENST00000641366 219 ntBASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 AC079781.4-201ENST00000641908 219 ntBASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIMD1Q9UGP4 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 AC113404.2-201ENST00000507884 177 ntBASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIMD1Q9UGP4 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 ABCD1P5-201ENST00000445663 754 ntBASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.8■□□□□ 0.6
LIMD1Q9UGP4 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms