Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC19.08■□□□□ 0.64
SMARCAL1Q9NZC9 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 AC036111.1-201ENST00000533973 1582 ntBASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 AC100803.2-201ENST00000562459 1963 ntBASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 AC073195.1-201ENST00000607241 877 ntBASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 AP000692.2-201ENST00000608391 879 ntBASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 HCG11-201ENST00000411553 5696 ntBASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 AC009102.3-201ENST00000623118 1491 ntBASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 LINC00602-201ENST00000629776 2065 ntBASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
SMARCAL1Q9NZC9 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 AL023806.1-201ENST00000603994 1649 ntBASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 BOC-212ENST00000485230 2173 ntTSL 2 BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SMARCAL1Q9NZC9 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCAL1Q9NZC9 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCAL1Q9NZC9 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC19.05■□□□□ 0.64
SMARCAL1Q9NZC9 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCAL1Q9NZC9 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
SMARCAL1Q9NZC9 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
SMARCAL1Q9NZC9 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
SMARCAL1Q9NZC9 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.05■□□□□ 0.64
SMARCAL1Q9NZC9 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
SMARCAL1Q9NZC9 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.05■□□□□ 0.64
SMARCAL1Q9NZC9 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC19.05■□□□□ 0.64
SMARCAL1Q9NZC9 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
SMARCAL1Q9NZC9 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCAL1Q9NZC9 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCAL1Q9NZC9 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCAL1Q9NZC9 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCAL1Q9NZC9 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCAL1Q9NZC9 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC19.05■□□□□ 0.64
SMARCAL1Q9NZC9 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SMARCAL1Q9NZC9 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
SMARCAL1Q9NZC9 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC19.04■□□□□ 0.64
SMARCAL1Q9NZC9 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
SMARCAL1Q9NZC9 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
SMARCAL1Q9NZC9 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
SMARCAL1Q9NZC9 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCAL1Q9NZC9 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCAL1Q9NZC9 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
SMARCAL1Q9NZC9 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCAL1Q9NZC9 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCAL1Q9NZC9 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCAL1Q9NZC9 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCAL1Q9NZC9 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCAL1Q9NZC9 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SMARCAL1Q9NZC9 MIR149-201ENST00000384879 89 ntBASIC19.04■□□□□ 0.64
SMARCAL1Q9NZC9 RPS2P55-201ENST00000397318 883 ntBASIC19.04■□□□□ 0.64
SMARCAL1Q9NZC9 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms