Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.29■□□□□ 0.68
CISHQ9NSE2 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.29■□□□□ 0.68
CISHQ9NSE2 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.29■□□□□ 0.68
CISHQ9NSE2 DBP-204ENST00000599385 709 ntTSL 3 BASIC19.29■□□□□ 0.68
CISHQ9NSE2 AL358472.4-201ENST00000633140 710 ntBASIC19.29■□□□□ 0.68
CISHQ9NSE2 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CISHQ9NSE2 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
CISHQ9NSE2 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
CISHQ9NSE2 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CISHQ9NSE2 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
CISHQ9NSE2 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CISHQ9NSE2 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CISHQ9NSE2 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CISHQ9NSE2 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CISHQ9NSE2 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CISHQ9NSE2 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC19.29■□□□□ 0.68
CISHQ9NSE2 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CISHQ9NSE2 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CISHQ9NSE2 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.29■□□□□ 0.68
CISHQ9NSE2 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC19.28■□□□□ 0.68
CISHQ9NSE2 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CISHQ9NSE2 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC19.28■□□□□ 0.68
CISHQ9NSE2 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.28■□□□□ 0.68
CISHQ9NSE2 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
CISHQ9NSE2 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.28■□□□□ 0.68
CISHQ9NSE2 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC19.28■□□□□ 0.68
CISHQ9NSE2 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.28■□□□□ 0.68
CISHQ9NSE2 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CISHQ9NSE2 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.28■□□□□ 0.68
CISHQ9NSE2 TSPY12P-201ENST00000421279 868 ntBASIC19.28■□□□□ 0.68
CISHQ9NSE2 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.28■□□□□ 0.68
CISHQ9NSE2 KRT18P65-201ENST00000439811 1286 ntBASIC19.28■□□□□ 0.68
CISHQ9NSE2 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.28■□□□□ 0.68
CISHQ9NSE2 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.28■□□□□ 0.68
CISHQ9NSE2 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.28■□□□□ 0.68
CISHQ9NSE2 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.28■□□□□ 0.68
CISHQ9NSE2 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CISHQ9NSE2 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CISHQ9NSE2 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CISHQ9NSE2 IER3-202ENST00000376377 1350 ntBASIC19.28■□□□□ 0.68
CISHQ9NSE2 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CISHQ9NSE2 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CISHQ9NSE2 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.28■□□□□ 0.68
CISHQ9NSE2 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CISHQ9NSE2 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CISHQ9NSE2 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CISHQ9NSE2 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CISHQ9NSE2 AC018470.1-201ENST00000624790 3129 ntBASIC19.27■□□□□ 0.68
CISHQ9NSE2 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC19.27■□□□□ 0.68
CISHQ9NSE2 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.27■□□□□ 0.68
CISHQ9NSE2 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CISHQ9NSE2 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC19.27■□□□□ 0.68
CISHQ9NSE2 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CISHQ9NSE2 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.27■□□□□ 0.68
CISHQ9NSE2 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CISHQ9NSE2 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CISHQ9NSE2 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CISHQ9NSE2 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
CISHQ9NSE2 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CISHQ9NSE2 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CISHQ9NSE2 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CISHQ9NSE2 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.27■□□□□ 0.68
CISHQ9NSE2 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.27■□□□□ 0.68
CISHQ9NSE2 AC009154.2-201ENST00000621177 724 ntBASIC19.27■□□□□ 0.68
CISHQ9NSE2 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.27■□□□□ 0.68
CISHQ9NSE2 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.27■□□□□ 0.68
CISHQ9NSE2 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC19.27■□□□□ 0.68
CISHQ9NSE2 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.27■□□□□ 0.68
CISHQ9NSE2 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.67
CISHQ9NSE2 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CISHQ9NSE2 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
CISHQ9NSE2 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CISHQ9NSE2 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CISHQ9NSE2 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CISHQ9NSE2 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.26■□□□□ 0.67
CISHQ9NSE2 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CISHQ9NSE2 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CISHQ9NSE2 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CISHQ9NSE2 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CISHQ9NSE2 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms