Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 MIR3180-5-201ENST00000583743 153 ntBASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 AL138688.1-201ENST00000624851 1594 ntBASIC17.62■□□□□ 0.41
CCDC28BQ9BUN5 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 LINC00602-201ENST00000629776 2065 ntBASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 RNA5SP413-201ENST00000516373 109 ntBASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 AP001094.4-201ENST00000579008 2176 ntBASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC28BQ9BUN5 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 AC073195.1-201ENST00000607241 877 ntBASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC28BQ9BUN5 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 HOXB1-202ENST00000577092 1414 ntBASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 AC096733.2-201ENST00000609937 1394 ntBASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CCDC28BQ9BUN5 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms