Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 OR7E47P-204ENST00000575924 449 ntBASIC17.8■□□□□ 0.44
VPS13AQ96RL7 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 AL513210.1-201ENST00000629608 234 ntBASIC17.8■□□□□ 0.44
VPS13AQ96RL7 SERF2-217ENST00000630046 862 ntTSL 5 BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VPS13AQ96RL7 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13AQ96RL7 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13AQ96RL7 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
VPS13AQ96RL7 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS13AQ96RL7 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.79■□□□□ 0.44
VPS13AQ96RL7 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.79■□□□□ 0.44
VPS13AQ96RL7 AC073592.5-201ENST00000624854 528 ntBASIC17.79■□□□□ 0.44
VPS13AQ96RL7 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS13AQ96RL7 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13AQ96RL7 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13AQ96RL7 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS13AQ96RL7 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13AQ96RL7 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13AQ96RL7 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13AQ96RL7 AP002414.1-201ENST00000391405 1147 ntBASIC17.79■□□□□ 0.44
VPS13AQ96RL7 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS13AQ96RL7 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.79■□□□□ 0.44
VPS13AQ96RL7 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC17.79■□□□□ 0.44
VPS13AQ96RL7 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13AQ96RL7 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VPS13AQ96RL7 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
VPS13AQ96RL7 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.79■□□□□ 0.44
VPS13AQ96RL7 RNA5SP421-201ENST00000516864 134 ntBASIC17.79■□□□□ 0.44
VPS13AQ96RL7 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.79■□□□□ 0.44
VPS13AQ96RL7 AC009154.2-201ENST00000621177 724 ntBASIC17.79■□□□□ 0.44
VPS13AQ96RL7 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS13AQ96RL7 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
VPS13AQ96RL7 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS13AQ96RL7 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
VPS13AQ96RL7 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS13AQ96RL7 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS13AQ96RL7 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VPS13AQ96RL7 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.78■□□□□ 0.44
VPS13AQ96RL7 LINC00628-201ENST00000628516 1289 ntBASIC17.78■□□□□ 0.44
VPS13AQ96RL7 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS13AQ96RL7 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.78■□□□□ 0.44
VPS13AQ96RL7 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS13AQ96RL7 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.78■□□□□ 0.44
VPS13AQ96RL7 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS13AQ96RL7 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS13AQ96RL7 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.78■□□□□ 0.44
VPS13AQ96RL7 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.78■□□□□ 0.44
VPS13AQ96RL7 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS13AQ96RL7 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VPS13AQ96RL7 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VPS13AQ96RL7 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS13AQ96RL7 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.77■□□□□ 0.44
VPS13AQ96RL7 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS13AQ96RL7 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS13AQ96RL7 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VPS13AQ96RL7 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VPS13AQ96RL7 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.77■□□□□ 0.44
VPS13AQ96RL7 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC17.77■□□□□ 0.44
VPS13AQ96RL7 AC092902.6-201ENST00000641783 218 ntBASIC17.77■□□□□ 0.44
VPS13AQ96RL7 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
VPS13AQ96RL7 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VPS13AQ96RL7 OR8S1-201ENST00000310194 1080 ntBASIC17.77■□□□□ 0.44
VPS13AQ96RL7 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VPS13AQ96RL7 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.77■□□□□ 0.44
VPS13AQ96RL7 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VPS13AQ96RL7 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
VPS13AQ96RL7 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.77■□□□□ 0.43
VPS13AQ96RL7 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.77■□□□□ 0.43
VPS13AQ96RL7 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
VPS13AQ96RL7 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VPS13AQ96RL7 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.77■□□□□ 0.43
VPS13AQ96RL7 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 AC007967.3-201ENST00000434308 558 ntBASIC17.76■□□□□ 0.43
VPS13AQ96RL7 BX005266.1-201ENST00000473402 457 ntBASIC17.76■□□□□ 0.43
VPS13AQ96RL7 YTHDF3-AS1-201ENST00000603538 718 ntBASIC17.76■□□□□ 0.43
VPS13AQ96RL7 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 AC008761.3-201ENST00000624803 892 ntBASIC17.76■□□□□ 0.43
VPS13AQ96RL7 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS13AQ96RL7 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms