Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 AC098590.1-201ENST00000468126 897 ntBASIC13.58□□□□□ -0.24
LINC00477Q96M19 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC13.58□□□□□ -0.24
LINC00477Q96M19 AC008687.5-201ENST00000593746 558 ntBASIC13.58□□□□□ -0.24
LINC00477Q96M19 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC13.58□□□□□ -0.24
LINC00477Q96M19 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
LINC00477Q96M19 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
LINC00477Q96M19 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC13.58□□□□□ -0.24
LINC00477Q96M19 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC13.58□□□□□ -0.24
LINC00477Q96M19 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
LINC00477Q96M19 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
LINC00477Q96M19 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 C2orf69P3-201ENST00000565542 1120 ntBASIC13.57□□□□□ -0.24
LINC00477Q96M19 MIR4785-201ENST00000585005 73 ntBASIC13.57□□□□□ -0.24
LINC00477Q96M19 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 AC010653.2-201ENST00000623505 997 ntBASIC13.57□□□□□ -0.24
LINC00477Q96M19 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
LINC00477Q96M19 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
LINC00477Q96M19 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 AC092338.2-201ENST00000568827 1415 ntBASIC13.56□□□□□ -0.24
LINC00477Q96M19 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC13.56□□□□□ -0.24
LINC00477Q96M19 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC13.56□□□□□ -0.24
LINC00477Q96M19 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC13.56□□□□□ -0.24
LINC00477Q96M19 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC13.56□□□□□ -0.24
LINC00477Q96M19 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
LINC00477Q96M19 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 MDFI-202ENST00000373050 809 ntTSL 2 BASIC13.56□□□□□ -0.24
LINC00477Q96M19 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC13.56□□□□□ -0.24
LINC00477Q96M19 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 DENND3-207ENST00000518347 850 ntTSL 2 BASIC13.56□□□□□ -0.24
LINC00477Q96M19 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms