Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 ACTG1P14-201ENST00000446382 1122 ntBASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 DUT-210ENST00000559935 569 ntTSL 3 BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
ALMS1Q8TCU4 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 MRPL20P1-201ENST00000400819 433 ntBASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 HLA-V-201ENST00000429037 534 ntBASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 YTHDF3-AS1-201ENST00000603538 718 ntBASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 HFE2-206ENST00000634927 506 ntTSL 4 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 AC099522.2-201ENST00000607001 744 ntBASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 AC004877.2-201ENST00000623941 599 ntBASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 GK-202ENST00000378941 458 ntTSL 3 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
ALMS1Q8TCU4 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
ALMS1Q8TCU4 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC12.08□□□□□ -0.47
ALMS1Q8TCU4 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
ALMS1Q8TCU4 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
ALMS1Q8TCU4 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC12.08□□□□□ -0.48
ALMS1Q8TCU4 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
ALMS1Q8TCU4 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
ALMS1Q8TCU4 ADM-208ENST00000534464 1640 ntTSL 2 BASIC12.08□□□□□ -0.48
ALMS1Q8TCU4 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
ALMS1Q8TCU4 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC12.08□□□□□ -0.48
ALMS1Q8TCU4 AC015922.1-201ENST00000421102 1152 ntBASIC12.08□□□□□ -0.48
ALMS1Q8TCU4 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
ALMS1Q8TCU4 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC12.08□□□□□ -0.48
ALMS1Q8TCU4 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC12.08□□□□□ -0.48
ALMS1Q8TCU4 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC12.08□□□□□ -0.48
ALMS1Q8TCU4 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC12.08□□□□□ -0.48
ALMS1Q8TCU4 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
ALMS1Q8TCU4 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
ALMS1Q8TCU4 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
ALMS1Q8TCU4 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
ALMS1Q8TCU4 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms