Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 MNT-208ENST00000575394 606 ntTSL 4 BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLRN3Q8NCR9 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 CICP13-201ENST00000422015 2789 ntBASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 AC096631.2-201ENST00000436136 790 ntBASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLRN3Q8NCR9 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 CYP2T1P-202ENST00000641596 2535 ntBASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 PBX2P1-201ENST00000493219 1291 ntBASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 AC106739.1-201ENST00000617035 715 ntBASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLRN3Q8NCR9 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms