Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 AC132938.6-201ENST00000623828 1655 ntBASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.1■□□□□ 0.81
CCDC65Q8IXS2 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 KRT18P48-201ENST00000434763 852 ntBASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 AC112907.2-201ENST00000448639 330 ntBASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 DUTP2-201ENST00000519164 463 ntBASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 TEN1-204ENST00000588202 862 ntTSL 3 BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 GATB-213ENST00000515812 1893 ntTSL 5 BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC65Q8IXS2 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC65Q8IXS2 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
CCDC65Q8IXS2 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC65Q8IXS2 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
CCDC65Q8IXS2 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC65Q8IXS2 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
CCDC65Q8IXS2 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC65Q8IXS2 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
CCDC65Q8IXS2 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
CCDC65Q8IXS2 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC65Q8IXS2 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC65Q8IXS2 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.08■□□□□ 0.81
CCDC65Q8IXS2 DUX4L26-201ENST00000489078 1255 ntBASIC20.08■□□□□ 0.81
CCDC65Q8IXS2 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC20.08■□□□□ 0.81
CCDC65Q8IXS2 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC65Q8IXS2 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
CCDC65Q8IXS2 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC65Q8IXS2 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC65Q8IXS2 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC65Q8IXS2 LINC00167-201ENST00000530583 1419 ntBASIC20.08■□□□□ 0.8
CCDC65Q8IXS2 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC20.08■□□□□ 0.8
CCDC65Q8IXS2 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC65Q8IXS2 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC65Q8IXS2 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
CCDC65Q8IXS2 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC65Q8IXS2 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC65Q8IXS2 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC65Q8IXS2 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC65Q8IXS2 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC20.08■□□□□ 0.8
CCDC65Q8IXS2 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC65Q8IXS2 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
CCDC65Q8IXS2 LINC00602-201ENST00000629776 2065 ntBASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 HBZP1-201ENST00000354915 429 ntBASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.07■□□□□ 0.8
CCDC65Q8IXS2 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms