Protein–RNA interactions for Protein: Q6VVB1

NHLRC1, E3 ubiquitin-protein ligase NHLRC1, humanhuman

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC1Q6VVB1 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 ATP5G1P1-201ENST00000448724 379 ntBASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 RASA4DP-201ENST00000460726 1199 ntBASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
NHLRC1Q6VVB1 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 STARP1-201ENST00000397973 869 ntBASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 RCN1P1-201ENST00000400413 996 ntBASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NHLRC1Q6VVB1 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 REXO1L9P-201ENST00000604264 2108 ntBASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 SPDYE15P-201ENST00000424157 909 ntBASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 TSPY5P-201ENST00000426936 936 ntBASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 HLA-F-220ENST00000434407 884 ntBASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 KRT18P57-201ENST00000443599 1254 ntBASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 HYMAI.1-201ENST00000620949 238 ntBASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 AC138028.4-201ENST00000564984 1845 ntBASIC16.24■□□□□ 0.19
NHLRC1Q6VVB1 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NHLRC1Q6VVB1 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NHLRC1Q6VVB1 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NHLRC1Q6VVB1 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms