Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC011467.2-201ENST00000598425 242 ntBASIC19.21■□□□□ 0.67
USP41Q3LFD5 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
USP41Q3LFD5 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP41Q3LFD5 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP41Q3LFD5 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.21■□□□□ 0.67
USP41Q3LFD5 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP41Q3LFD5 AC005082.1-201ENST00000413042 2259 ntBASIC19.21■□□□□ 0.67
USP41Q3LFD5 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP41Q3LFD5 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.21■□□□□ 0.67
USP41Q3LFD5 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC19.21■□□□□ 0.67
USP41Q3LFD5 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.2■□□□□ 0.66
USP41Q3LFD5 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP41Q3LFD5 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.2■□□□□ 0.66
USP41Q3LFD5 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
USP41Q3LFD5 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
USP41Q3LFD5 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP41Q3LFD5 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP41Q3LFD5 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
USP41Q3LFD5 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP41Q3LFD5 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP41Q3LFD5 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP41Q3LFD5 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP41Q3LFD5 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.2■□□□□ 0.66
USP41Q3LFD5 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.2■□□□□ 0.66
USP41Q3LFD5 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP41Q3LFD5 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
USP41Q3LFD5 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.2■□□□□ 0.66
USP41Q3LFD5 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.2■□□□□ 0.66
USP41Q3LFD5 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP41Q3LFD5 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP41Q3LFD5 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.2■□□□□ 0.66
USP41Q3LFD5 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.2■□□□□ 0.66
USP41Q3LFD5 MTDHP3-201ENST00000594186 672 ntBASIC19.2■□□□□ 0.66
USP41Q3LFD5 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC19.2■□□□□ 0.66
USP41Q3LFD5 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.2■□□□□ 0.66
USP41Q3LFD5 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.2■□□□□ 0.66
USP41Q3LFD5 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC19.2■□□□□ 0.66
USP41Q3LFD5 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP41Q3LFD5 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP41Q3LFD5 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP41Q3LFD5 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP41Q3LFD5 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP41Q3LFD5 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP41Q3LFD5 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP41Q3LFD5 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC19.19■□□□□ 0.66
USP41Q3LFD5 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.19■□□□□ 0.66
USP41Q3LFD5 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP41Q3LFD5 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.19■□□□□ 0.66
USP41Q3LFD5 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC19.19■□□□□ 0.66
USP41Q3LFD5 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC19.19■□□□□ 0.66
USP41Q3LFD5 FGFR3P6-201ENST00000457012 610 ntBASIC19.19■□□□□ 0.66
USP41Q3LFD5 SCARNA2-201ENST00000458748 420 ntBASIC19.19■□□□□ 0.66
USP41Q3LFD5 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC19.19■□□□□ 0.66
USP41Q3LFD5 AC093909.1-201ENST00000504731 1122 ntBASIC19.19■□□□□ 0.66
USP41Q3LFD5 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC19.19■□□□□ 0.66
USP41Q3LFD5 AC112698.1-201ENST00000510299 916 ntBASIC19.19■□□□□ 0.66
USP41Q3LFD5 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC19.19■□□□□ 0.66
USP41Q3LFD5 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.19■□□□□ 0.66
USP41Q3LFD5 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC19.19■□□□□ 0.66
USP41Q3LFD5 AC148477.8-201ENST00000624298 468 ntBASIC19.19■□□□□ 0.66
USP41Q3LFD5 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC19.19■□□□□ 0.66
USP41Q3LFD5 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
USP41Q3LFD5 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP41Q3LFD5 IL9RP2-201ENST00000423948 1312 ntBASIC19.19■□□□□ 0.66
USP41Q3LFD5 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP41Q3LFD5 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP41Q3LFD5 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP41Q3LFD5 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP41Q3LFD5 GMCL1P1-201ENST00000463439 1581 ntBASIC19.19■□□□□ 0.66
USP41Q3LFD5 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
USP41Q3LFD5 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.19■□□□□ 0.66
USP41Q3LFD5 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP41Q3LFD5 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP41Q3LFD5 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP41Q3LFD5 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
USP41Q3LFD5 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
USP41Q3LFD5 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
USP41Q3LFD5 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
USP41Q3LFD5 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP41Q3LFD5 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC19.18■□□□□ 0.66
USP41Q3LFD5 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC19.18■□□□□ 0.66
USP41Q3LFD5 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP41Q3LFD5 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.18■□□□□ 0.66
USP41Q3LFD5 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC19.18■□□□□ 0.66
USP41Q3LFD5 RNPS1P1-201ENST00000507437 918 ntBASIC19.18■□□□□ 0.66
USP41Q3LFD5 AC073648.2-201ENST00000510116 352 ntBASIC19.18■□□□□ 0.66
USP41Q3LFD5 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC19.18■□□□□ 0.66
USP41Q3LFD5 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.18■□□□□ 0.66
USP41Q3LFD5 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC19.18■□□□□ 0.66
USP41Q3LFD5 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC19.18■□□□□ 0.66
USP41Q3LFD5 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.18■□□□□ 0.66
USP41Q3LFD5 AP001269.4-201ENST00000609611 512 ntBASIC19.18■□□□□ 0.66
USP41Q3LFD5 NME4-212ENST00000621774 904 ntTSL 3 BASIC19.18■□□□□ 0.66
USP41Q3LFD5 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
USP41Q3LFD5 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP41Q3LFD5 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
USP41Q3LFD5 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
USP41Q3LFD5 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP41Q3LFD5 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
USP41Q3LFD5 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms