Protein–RNA interactions for Protein: Q2NKJ3

CTC1, CST complex subunit CTC1, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1Q2NKJ3 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 AC098831.1-202ENST00000438821 336 ntBASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CTC1Q2NKJ3 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 CSF3-203ENST00000394148 622 ntTSL 3 BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 LBH-204ENST00000406087 559 ntTSL 4 BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 HNRNPA1P28-201ENST00000424481 961 ntBASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 AL356488.2-201ENST00000602755 427 ntBASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 AC104109.2-201ENST00000602919 1418 ntBASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTC1Q2NKJ3 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 GPX1P2-201ENST00000429271 606 ntBASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 NMU-202ENST00000505262 693 ntTSL 3 BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 AC034105.1-201ENST00000563488 319 ntBASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 AC027796.2-201ENST00000575326 344 ntBASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 AC135050.7-201ENST00000624508 2218 ntBASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTC1Q2NKJ3 AL390961.4-201ENST00000623958 2535 ntBASIC19.29■□□□□ 0.68
CTC1Q2NKJ3 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
CTC1Q2NKJ3 TP73-AS1-210ENST00000637775 1455 ntBASIC19.29■□□□□ 0.68
CTC1Q2NKJ3 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.29■□□□□ 0.68
CTC1Q2NKJ3 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.29■□□□□ 0.68
CTC1Q2NKJ3 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CTC1Q2NKJ3 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
CTC1Q2NKJ3 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CTC1Q2NKJ3 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CTC1Q2NKJ3 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTC1Q2NKJ3 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC19.29■□□□□ 0.68
CTC1Q2NKJ3 AL591424.1-201ENST00000442569 1213 ntBASIC19.29■□□□□ 0.68
CTC1Q2NKJ3 URGCP-206ENST00000446958 365 ntTSL 2 BASIC19.29■□□□□ 0.68
CTC1Q2NKJ3 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTC1Q2NKJ3 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.29■□□□□ 0.68
CTC1Q2NKJ3 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CTC1Q2NKJ3 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.29■□□□□ 0.68
CTC1Q2NKJ3 AP001269.4-201ENST00000609611 512 ntBASIC19.29■□□□□ 0.68
CTC1Q2NKJ3 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms