Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CCNA1P78396 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC20.52■□□□□ 0.88
CCNA1P78396 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CCNA1P78396 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCNA1P78396 AC007967.3-201ENST00000434308 558 ntBASIC20.52■□□□□ 0.88
CCNA1P78396 HS6ST1P1-201ENST00000481504 1234 ntBASIC20.52■□□□□ 0.88
CCNA1P78396 RNA5SP416-201ENST00000516838 111 ntBASIC20.52■□□□□ 0.88
CCNA1P78396 UNC93B6-202ENST00000528242 690 ntBASIC20.52■□□□□ 0.88
CCNA1P78396 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCNA1P78396 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC20.52■□□□□ 0.88
CCNA1P78396 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCNA1P78396 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
CCNA1P78396 RPS29-206ENST00000557111 488 ntTSL 2 BASIC20.52■□□□□ 0.88
CCNA1P78396 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC20.52■□□□□ 0.88
CCNA1P78396 MIR3687-2-201ENST00000577708 61 ntBASIC20.52■□□□□ 0.88
CCNA1P78396 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.52■□□□□ 0.88
CCNA1P78396 MIR3687-1-201ENST00000614492 61 ntBASIC20.52■□□□□ 0.88
CCNA1P78396 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCNA1P78396 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CCNA1P78396 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCNA1P78396 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCNA1P78396 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.52■□□□□ 0.87
CCNA1P78396 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.52■□□□□ 0.87
CCNA1P78396 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCNA1P78396 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.51■□□□□ 0.87
CCNA1P78396 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCNA1P78396 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCNA1P78396 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCNA1P78396 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCNA1P78396 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCNA1P78396 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCNA1P78396 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC20.51■□□□□ 0.87
CCNA1P78396 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC20.51■□□□□ 0.87
CCNA1P78396 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC20.51■□□□□ 0.87
CCNA1P78396 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC20.51■□□□□ 0.87
CCNA1P78396 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCNA1P78396 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC20.51■□□□□ 0.87
CCNA1P78396 AL022326.1-202ENST00000641533 845 ntBASIC20.51■□□□□ 0.87
CCNA1P78396 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.51■□□□□ 0.87
CCNA1P78396 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCNA1P78396 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.51■□□□□ 0.87
CCNA1P78396 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCNA1P78396 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCNA1P78396 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.51■□□□□ 0.87
CCNA1P78396 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
CCNA1P78396 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCNA1P78396 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCNA1P78396 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
CCNA1P78396 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNA1P78396 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNA1P78396 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNA1P78396 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNA1P78396 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.5■□□□□ 0.87
CCNA1P78396 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCNA1P78396 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.5■□□□□ 0.87
CCNA1P78396 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNA1P78396 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNA1P78396 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNA1P78396 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNA1P78396 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNA1P78396 CENPM-204ENST00000402420 688 ntTSL 5 BASIC20.5■□□□□ 0.87
CCNA1P78396 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC20.5■□□□□ 0.87
CCNA1P78396 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC20.5■□□□□ 0.87
CCNA1P78396 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCNA1P78396 AC010327.4-202ENST00000591484 748 ntBASIC20.5■□□□□ 0.87
CCNA1P78396 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCNA1P78396 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
CCNA1P78396 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCNA1P78396 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC20.5■□□□□ 0.87
CCNA1P78396 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CCNA1P78396 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.5■□□□□ 0.87
CCNA1P78396 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.5■□□□□ 0.87
CCNA1P78396 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNA1P78396 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNA1P78396 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCNA1P78396 AP002414.3-201ENST00000589352 1468 ntBASIC20.5■□□□□ 0.87
CCNA1P78396 AC079776.2-201ENST00000641154 1609 ntBASIC20.49■□□□□ 0.87
CCNA1P78396 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCNA1P78396 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCNA1P78396 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CCNA1P78396 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC20.49■□□□□ 0.87
CCNA1P78396 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCNA1P78396 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC20.49■□□□□ 0.87
CCNA1P78396 GPX1P2-201ENST00000429271 606 ntBASIC20.49■□□□□ 0.87
CCNA1P78396 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCNA1P78396 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC20.49■□□□□ 0.87
CCNA1P78396 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC20.49■□□□□ 0.87
CCNA1P78396 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCNA1P78396 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC20.49■□□□□ 0.87
CCNA1P78396 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC20.49■□□□□ 0.87
CCNA1P78396 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC20.49■□□□□ 0.87
CCNA1P78396 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.49■□□□□ 0.87
CCNA1P78396 MIR1199-201ENST00000621445 119 ntBASIC20.49■□□□□ 0.87
CCNA1P78396 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC20.49■□□□□ 0.87
CCNA1P78396 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC20.49■□□□□ 0.87
CCNA1P78396 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CCNA1P78396 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC20.49■□□□□ 0.87
CCNA1P78396 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCNA1P78396 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CCNA1P78396 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 189 ms