Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
RNF4P78317 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RNF4P78317 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.73■□□□□ 0.27
RNF4P78317 KRT18P65-201ENST00000439811 1286 ntBASIC16.73■□□□□ 0.27
RNF4P78317 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.73■□□□□ 0.27
RNF4P78317 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.73■□□□□ 0.27
RNF4P78317 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.73■□□□□ 0.27
RNF4P78317 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
RNF4P78317 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.73■□□□□ 0.27
RNF4P78317 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.73■□□□□ 0.27
RNF4P78317 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.73■□□□□ 0.27
RNF4P78317 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.73■□□□□ 0.27
RNF4P78317 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RNF4P78317 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
RNF4P78317 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.73■□□□□ 0.27
RNF4P78317 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RNF4P78317 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RNF4P78317 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF4P78317 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF4P78317 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF4P78317 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF4P78317 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.72■□□□□ 0.27
RNF4P78317 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF4P78317 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.72■□□□□ 0.27
RNF4P78317 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.72■□□□□ 0.27
RNF4P78317 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
RNF4P78317 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF4P78317 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.72■□□□□ 0.27
RNF4P78317 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF4P78317 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF4P78317 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.72■□□□□ 0.27
RNF4P78317 LINC00265-3P-201ENST00000447588 903 ntBASIC16.72■□□□□ 0.27
RNF4P78317 TOB2P1-201ENST00000469761 992 ntBASIC16.72■□□□□ 0.27
RNF4P78317 AC068472.1-201ENST00000474589 881 ntBASIC16.72■□□□□ 0.27
RNF4P78317 KRT18P56-201ENST00000507275 550 ntBASIC16.72■□□□□ 0.27
RNF4P78317 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.72■□□□□ 0.27
RNF4P78317 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.72■□□□□ 0.27
RNF4P78317 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.72■□□□□ 0.27
RNF4P78317 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
RNF4P78317 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.72■□□□□ 0.27
RNF4P78317 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.72■□□□□ 0.27
RNF4P78317 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF4P78317 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC16.72■□□□□ 0.27
RNF4P78317 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.72■□□□□ 0.27
RNF4P78317 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.72■□□□□ 0.27
RNF4P78317 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
RNF4P78317 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF4P78317 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
RNF4P78317 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
RNF4P78317 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.72■□□□□ 0.27
RNF4P78317 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.72■□□□□ 0.27
RNF4P78317 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.72■□□□□ 0.27
RNF4P78317 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.71■□□□□ 0.27
RNF4P78317 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.71■□□□□ 0.27
RNF4P78317 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF4P78317 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF4P78317 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.71■□□□□ 0.27
RNF4P78317 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
RNF4P78317 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
RNF4P78317 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RNF4P78317 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
RNF4P78317 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.71■□□□□ 0.27
RNF4P78317 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
RNF4P78317 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.71■□□□□ 0.27
RNF4P78317 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.71■□□□□ 0.27
RNF4P78317 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.71■□□□□ 0.27
RNF4P78317 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
RNF4P78317 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
RNF4P78317 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF4P78317 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.71■□□□□ 0.27
RNF4P78317 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RNF4P78317 AC011840.4-201ENST00000578471 627 ntBASIC16.71■□□□□ 0.27
RNF4P78317 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
RNF4P78317 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.71■□□□□ 0.27
RNF4P78317 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF4P78317 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
RNF4P78317 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.71■□□□□ 0.27
RNF4P78317 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.71■□□□□ 0.27
RNF4P78317 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
RNF4P78317 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
RNF4P78317 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RNF4P78317 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF4P78317 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.7■□□□□ 0.26
RNF4P78317 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF4P78317 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC16.7■□□□□ 0.26
RNF4P78317 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF4P78317 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
RNF4P78317 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.7■□□□□ 0.26
RNF4P78317 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
RNF4P78317 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.7■□□□□ 0.26
RNF4P78317 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RNF4P78317 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF4P78317 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC16.7■□□□□ 0.26
RNF4P78317 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.7■□□□□ 0.26
RNF4P78317 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.7■□□□□ 0.26
RNF4P78317 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.7■□□□□ 0.26
RNF4P78317 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
RNF4P78317 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.7■□□□□ 0.26
RNF4P78317 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF4P78317 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms