Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 AC130371.2-201ENST00000619443 611 ntBASIC20.3■□□□□ 0.84
TPM4P67936 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
TPM4P67936 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
TPM4P67936 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TPM4P67936 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.3■□□□□ 0.84
TPM4P67936 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC20.3■□□□□ 0.84
TPM4P67936 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TPM4P67936 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC20.3■□□□□ 0.84
TPM4P67936 AL023806.1-201ENST00000603994 1649 ntBASIC20.3■□□□□ 0.84
TPM4P67936 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
TPM4P67936 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.3■□□□□ 0.84
TPM4P67936 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
TPM4P67936 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
TPM4P67936 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TPM4P67936 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TPM4P67936 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TPM4P67936 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TPM4P67936 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC20.29■□□□□ 0.84
TPM4P67936 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TPM4P67936 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
TPM4P67936 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TPM4P67936 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TPM4P67936 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.29■□□□□ 0.84
TPM4P67936 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TPM4P67936 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TPM4P67936 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TPM4P67936 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TPM4P67936 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.29■□□□□ 0.84
TPM4P67936 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
TPM4P67936 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.29■□□□□ 0.84
TPM4P67936 AC008622.2-201ENST00000617006 1229 ntBASIC20.29■□□□□ 0.84
TPM4P67936 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TPM4P67936 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TPM4P67936 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TPM4P67936 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC20.29■□□□□ 0.84
TPM4P67936 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TPM4P67936 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TPM4P67936 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.29■□□□□ 0.84
TPM4P67936 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM4P67936 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM4P67936 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.28■□□□□ 0.84
TPM4P67936 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM4P67936 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
TPM4P67936 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC20.28■□□□□ 0.84
TPM4P67936 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM4P67936 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.28■□□□□ 0.84
TPM4P67936 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TPM4P67936 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TPM4P67936 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
TPM4P67936 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM4P67936 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM4P67936 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM4P67936 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TPM4P67936 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
TPM4P67936 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TPM4P67936 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
TPM4P67936 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
TPM4P67936 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
TPM4P67936 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TPM4P67936 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TPM4P67936 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TPM4P67936 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
TPM4P67936 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
TPM4P67936 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
TPM4P67936 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC20.27■□□□□ 0.84
TPM4P67936 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TPM4P67936 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
TPM4P67936 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.27■□□□□ 0.84
TPM4P67936 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
TPM4P67936 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.27■□□□□ 0.84
TPM4P67936 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TPM4P67936 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.27■□□□□ 0.84
TPM4P67936 AC008040.2-201ENST00000461049 708 ntBASIC20.27■□□□□ 0.84
TPM4P67936 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.27■□□□□ 0.84
TPM4P67936 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.27■□□□□ 0.84
TPM4P67936 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TPM4P67936 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TPM4P67936 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TPM4P67936 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC20.27■□□□□ 0.84
TPM4P67936 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.27■□□□□ 0.84
TPM4P67936 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
TPM4P67936 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TPM4P67936 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
TPM4P67936 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
TPM4P67936 AL163051.1-201ENST00000569214 1512 ntBASIC20.27■□□□□ 0.83
TPM4P67936 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
TPM4P67936 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
TPM4P67936 AC108860.2-201ENST00000562760 2183 ntBASIC20.27■□□□□ 0.83
TPM4P67936 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC20.26■□□□□ 0.83
TPM4P67936 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.26■□□□□ 0.83
TPM4P67936 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.26■□□□□ 0.83
TPM4P67936 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TPM4P67936 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
TPM4P67936 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TPM4P67936 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.26■□□□□ 0.83
TPM4P67936 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC20.26■□□□□ 0.83
TPM4P67936 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
TPM4P67936 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
TPM4P67936 AL355802.2-201ENST00000402069 882 ntBASIC20.26■□□□□ 0.83
TPM4P67936 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms