Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SRP54P61011 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
SRP54P61011 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
SRP54P61011 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SRP54P61011 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SRP54P61011 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.82■□□□□ 0.44
SRP54P61011 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
SRP54P61011 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
SRP54P61011 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
SRP54P61011 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
SRP54P61011 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
SRP54P61011 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SRP54P61011 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SRP54P61011 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.82■□□□□ 0.44
SRP54P61011 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
SRP54P61011 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SRP54P61011 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.82■□□□□ 0.44
SRP54P61011 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SRP54P61011 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SRP54P61011 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.82■□□□□ 0.44
SRP54P61011 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.82■□□□□ 0.44
SRP54P61011 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SRP54P61011 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
SRP54P61011 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SRP54P61011 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SRP54P61011 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SRP54P61011 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.82■□□□□ 0.44
SRP54P61011 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.82■□□□□ 0.44
SRP54P61011 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SRP54P61011 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SRP54P61011 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SRP54P61011 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.81■□□□□ 0.44
SRP54P61011 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SRP54P61011 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.81■□□□□ 0.44
SRP54P61011 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SRP54P61011 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SRP54P61011 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.81■□□□□ 0.44
SRP54P61011 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SRP54P61011 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
SRP54P61011 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SRP54P61011 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SRP54P61011 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SRP54P61011 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.81■□□□□ 0.44
SRP54P61011 NUS1P2-201ENST00000417358 873 ntBASIC17.81■□□□□ 0.44
SRP54P61011 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.81■□□□□ 0.44
SRP54P61011 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.81■□□□□ 0.44
SRP54P61011 KRT16P4-201ENST00000453883 522 ntBASIC17.81■□□□□ 0.44
SRP54P61011 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.81■□□□□ 0.44
SRP54P61011 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.81■□□□□ 0.44
SRP54P61011 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.81■□□□□ 0.44
SRP54P61011 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.81■□□□□ 0.44
SRP54P61011 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SRP54P61011 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.81■□□□□ 0.44
SRP54P61011 AC009154.2-201ENST00000621177 724 ntBASIC17.81■□□□□ 0.44
SRP54P61011 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.81■□□□□ 0.44
SRP54P61011 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SRP54P61011 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SRP54P61011 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.81■□□□□ 0.44
SRP54P61011 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
SRP54P61011 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SRP54P61011 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.8■□□□□ 0.44
SRP54P61011 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
SRP54P61011 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
SRP54P61011 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
SRP54P61011 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.8■□□□□ 0.44
SRP54P61011 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SRP54P61011 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SRP54P61011 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.8■□□□□ 0.44
SRP54P61011 GMCL1P1-201ENST00000463439 1581 ntBASIC17.8■□□□□ 0.44
SRP54P61011 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SRP54P61011 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
SRP54P61011 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SRP54P61011 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SRP54P61011 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SRP54P61011 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SRP54P61011 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SRP54P61011 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SRP54P61011 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
SRP54P61011 POM121L3P-201ENST00000419331 1163 ntBASIC17.8■□□□□ 0.44
SRP54P61011 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.8■□□□□ 0.44
SRP54P61011 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SRP54P61011 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SRP54P61011 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.8■□□□□ 0.44
SRP54P61011 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.8■□□□□ 0.44
SRP54P61011 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.8■□□□□ 0.44
SRP54P61011 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
SRP54P61011 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SRP54P61011 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SRP54P61011 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.8■□□□□ 0.44
SRP54P61011 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
SRP54P61011 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.8■□□□□ 0.44
SRP54P61011 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.79■□□□□ 0.44
SRP54P61011 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SRP54P61011 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SRP54P61011 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SRP54P61011 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.79■□□□□ 0.44
SRP54P61011 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SRP54P61011 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
SRP54P61011 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SRP54P61011 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms