Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC19.83■□□□□ 0.77
CLCN3P51790 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC19.83■□□□□ 0.77
CLCN3P51790 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.83■□□□□ 0.77
CLCN3P51790 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC19.83■□□□□ 0.77
CLCN3P51790 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
CLCN3P51790 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.83■□□□□ 0.76
CLCN3P51790 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CLCN3P51790 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CLCN3P51790 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.83■□□□□ 0.76
CLCN3P51790 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CLCN3P51790 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CLCN3P51790 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.83■□□□□ 0.76
CLCN3P51790 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CLCN3P51790 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CLCN3P51790 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
CLCN3P51790 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.83■□□□□ 0.76
CLCN3P51790 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CLCN3P51790 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CLCN3P51790 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CLCN3P51790 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLCN3P51790 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
CLCN3P51790 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.82■□□□□ 0.76
CLCN3P51790 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLCN3P51790 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CLCN3P51790 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLCN3P51790 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19.82■□□□□ 0.76
CLCN3P51790 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.82■□□□□ 0.76
CLCN3P51790 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLCN3P51790 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
CLCN3P51790 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.82■□□□□ 0.76
CLCN3P51790 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLCN3P51790 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.82■□□□□ 0.76
CLCN3P51790 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.82■□□□□ 0.76
CLCN3P51790 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.82■□□□□ 0.76
CLCN3P51790 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.82■□□□□ 0.76
CLCN3P51790 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLCN3P51790 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.82■□□□□ 0.76
CLCN3P51790 AC011467.2-201ENST00000598425 242 ntBASIC19.82■□□□□ 0.76
CLCN3P51790 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC19.82■□□□□ 0.76
CLCN3P51790 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CLCN3P51790 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLCN3P51790 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.82■□□□□ 0.76
CLCN3P51790 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLCN3P51790 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
CLCN3P51790 INTS4P1-201ENST00000438455 1935 ntBASIC19.82■□□□□ 0.76
CLCN3P51790 AC004408.2-201ENST00000623613 2777 ntBASIC19.82■□□□□ 0.76
CLCN3P51790 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CLCN3P51790 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.82■□□□□ 0.76
CLCN3P51790 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
CLCN3P51790 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CLCN3P51790 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLCN3P51790 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLCN3P51790 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
CLCN3P51790 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLCN3P51790 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLCN3P51790 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLCN3P51790 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CLCN3P51790 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLCN3P51790 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLCN3P51790 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLCN3P51790 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.81■□□□□ 0.76
CLCN3P51790 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC19.81■□□□□ 0.76
CLCN3P51790 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.81■□□□□ 0.76
CLCN3P51790 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CLCN3P51790 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.81■□□□□ 0.76
CLCN3P51790 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.81■□□□□ 0.76
CLCN3P51790 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CLCN3P51790 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.81■□□□□ 0.76
CLCN3P51790 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.81■□□□□ 0.76
CLCN3P51790 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLCN3P51790 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC19.81■□□□□ 0.76
CLCN3P51790 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CLCN3P51790 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.81■□□□□ 0.76
CLCN3P51790 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLCN3P51790 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLCN3P51790 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLCN3P51790 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CLCN3P51790 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.8■□□□□ 0.76
CLCN3P51790 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.8■□□□□ 0.76
CLCN3P51790 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLCN3P51790 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
CLCN3P51790 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLCN3P51790 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLCN3P51790 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLCN3P51790 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CLCN3P51790 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLCN3P51790 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLCN3P51790 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CLCN3P51790 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.8■□□□□ 0.76
CLCN3P51790 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLCN3P51790 AC106795.1-205ENST00000512851 1056 ntBASIC19.8■□□□□ 0.76
CLCN3P51790 AC008608.2-201ENST00000606089 416 ntBASIC19.8■□□□□ 0.76
CLCN3P51790 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC19.8■□□□□ 0.76
CLCN3P51790 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
CLCN3P51790 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CLCN3P51790 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLCN3P51790 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
CLCN3P51790 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CLCN3P51790 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CLCN3P51790 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms