Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC19.95■□□□□ 0.78
MMP3P08254 MTDHP4-201ENST00000600287 670 ntBASIC19.95■□□□□ 0.78
MMP3P08254 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MMP3P08254 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MMP3P08254 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
MMP3P08254 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
MMP3P08254 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.95■□□□□ 0.78
MMP3P08254 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MMP3P08254 AC010460.3-201ENST00000511359 1579 ntBASIC19.95■□□□□ 0.78
MMP3P08254 KRT8P47-201ENST00000604727 1398 ntBASIC19.95■□□□□ 0.78
MMP3P08254 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.94■□□□□ 0.78
MMP3P08254 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.94■□□□□ 0.78
MMP3P08254 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.94■□□□□ 0.78
MMP3P08254 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.94■□□□□ 0.78
MMP3P08254 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.94■□□□□ 0.78
MMP3P08254 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
MMP3P08254 AC092865.5-201ENST00000545435 363 ntBASIC19.94■□□□□ 0.78
MMP3P08254 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC19.94■□□□□ 0.78
MMP3P08254 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
MMP3P08254 AC008735.5-201ENST00000623544 497 ntBASIC19.94■□□□□ 0.78
MMP3P08254 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC19.94■□□□□ 0.78
MMP3P08254 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 CROCCP3-202ENST00000420820 1947 ntBASIC19.94■□□□□ 0.78
MMP3P08254 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
MMP3P08254 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
MMP3P08254 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
MMP3P08254 SLC25A24-204ENST00000569674 2357 ntBASIC19.93■□□□□ 0.78
MMP3P08254 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.93■□□□□ 0.78
MMP3P08254 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.93■□□□□ 0.78
MMP3P08254 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MMP3P08254 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC19.93■□□□□ 0.78
MMP3P08254 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MMP3P08254 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MMP3P08254 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MMP3P08254 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MMP3P08254 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.93■□□□□ 0.78
MMP3P08254 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MMP3P08254 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MMP3P08254 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
MMP3P08254 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC19.93■□□□□ 0.78
MMP3P08254 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.93■□□□□ 0.78
MMP3P08254 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
MMP3P08254 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
MMP3P08254 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
MMP3P08254 AC107918.4-202ENST00000641623 219 ntBASIC19.93■□□□□ 0.78
MMP3P08254 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MMP3P08254 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MMP3P08254 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MMP3P08254 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
MMP3P08254 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
MMP3P08254 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MMP3P08254 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MMP3P08254 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
MMP3P08254 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
MMP3P08254 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MMP3P08254 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.92■□□□□ 0.78
MMP3P08254 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
MMP3P08254 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
MMP3P08254 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MMP3P08254 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MMP3P08254 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MMP3P08254 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MMP3P08254 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MMP3P08254 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MMP3P08254 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.92■□□□□ 0.78
MMP3P08254 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC19.92■□□□□ 0.78
MMP3P08254 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC19.92■□□□□ 0.78
MMP3P08254 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC19.92■□□□□ 0.78
MMP3P08254 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.92■□□□□ 0.78
MMP3P08254 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MMP3P08254 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.92■□□□□ 0.78
MMP3P08254 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC19.92■□□□□ 0.78
MMP3P08254 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MMP3P08254 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
MMP3P08254 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC19.92■□□□□ 0.78
MMP3P08254 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
MMP3P08254 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.91■□□□□ 0.78
MMP3P08254 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MMP3P08254 AC079776.2-201ENST00000641154 1609 ntBASIC19.91■□□□□ 0.78
MMP3P08254 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MMP3P08254 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms